View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_155 (Length: 246)
Name: NF2519_low_155
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_155 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 52600389 - 52600189
Alignment:
| Q |
14 |
atttacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatcctcttcatcacctcttctggtaaatt |
113 |
Q |
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| T |
52600389 |
atttacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatcctcttcatcacctcttctggtaaatt |
52600290 |
T |
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| Q |
114 |
gccaagcacaaataacagaaatatggttatttttataagccgcgcaaccatgggcaaaattaaactaaattatatatgttgctatgtaagcattaaatag |
213 |
Q |
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| T |
52600289 |
gccaagcacaaataacagaaatatggttatttttataagccgcgcaaccatgggcaaaattaaactaaattatatatgttgctatttaagcattaaatag |
52600190 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
52600189 |
t |
52600189 |
T |
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