View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_16 (Length: 534)
Name: NF2519_low_16
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 44262284 - 44261779
Alignment:
| Q |
11 |
catcatcattgtcaaaatccatggaaaatctcaccacactgaacattttttagataagcaataatttcactattggaaggtcaaggatacttacaacctt |
110 |
Q |
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| T |
44262284 |
catcaccattgtcaaaatccatggaaaatctcaccacactgaacattttttagataagcaataatttcactattggaaggtcagggatacttacaacctt |
44262185 |
T |
|
| Q |
111 |
aaatgcatccatcccgaggagcttggaagttccacttccttatagacgcctcgactagatgttcttgagccatggaacatccaatttactctggagagat |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262184 |
aaatgcatccatcccaaggagcttggaagttccacttccttatagacgcctcgactagatgttcttgagccatggaacatccaatttactctggagagat |
44262085 |
T |
|
| Q |
211 |
taaagaaactcttggcagccaaggaaatctcacaacatcgatacttttcaatattgctttctctggtccaattccatcaagactaccaatgtgtttgttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44262084 |
taaagaaactcttggcagccaaggaaatctcacaacattgatacttttcaatattgctttctctggtccaattccatcaagactaccaatgtgtttgttg |
44261985 |
T |
|
| Q |
311 |
ttggtattcgaattcagaacaaattttgtttccatgacagttcatgtggttggtcttggctaacaatagtcgcactagtggaactccagatgaaattcct |
410 |
Q |
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| T |
44261984 |
ttggtattcgaattcagaacaaattttgtttccatgacagttcatgtggttggtcttggctaacaatagtcgcactagtggaactccagatgaaattcct |
44261885 |
T |
|
| Q |
411 |
tcttccagatcactttctttcattgatctgtcaagaaacattctccattcttctaacccttccaccattctttatattccaaaccttcaagttttcatgc |
510 |
Q |
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| T |
44261884 |
tcttccagatcactttctttcattgatctgtcaagaaacatactccattcttctaacccttccaccattctttatattccaaaccttcaagttttcatgc |
44261785 |
T |
|
| Q |
511 |
tctagt |
516 |
Q |
| |
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|||||| |
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| T |
44261784 |
tctagt |
44261779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 44259582 - 44259497
Alignment:
| Q |
432 |
attgatctgtcaagaaacattctccattcttctaacccttccaccattctttatattccaaaccttcaagttttcatgctctagtt |
517 |
Q |
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| T |
44259582 |
attgatctgtcaagaaacaaactcctttcttctctcccttcctccattctttacattccaaacattcaagttttcatgctctagtt |
44259497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 495
Target Start/End: Complemental strand, 44254285 - 44254178
Alignment:
| Q |
388 |
gtggaactccagatgaaattccttcttccagatcactttctttcattgatctgtcaagaaacattctccattcttctaacccttccaccattctttatat |
487 |
Q |
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|||||| || |||| | ||||||||||||| | ||||||||| ||||||| | ||||||||| |||||||||||| ||||| |||||||||||| || |
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| T |
44254285 |
gtggaattcaagataacattccttcttccataccactttcttccattgatgtcacaagaaacaaactccattcttctctccctttcaccattctttacat |
44254186 |
T |
|
| Q |
488 |
tccaaacc |
495 |
Q |
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|||||||| |
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| T |
44254185 |
tccaaacc |
44254178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 372 - 507
Target Start/End: Complemental strand, 39469314 - 39469179
Alignment:
| Q |
372 |
aacaatagtcgcactagtggaactccagatgaaattccttcttccagatcactttctttcattgatctgtcaagaaacattctccattcttctaaccctt |
471 |
Q |
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|||||||||| |||| ||| || ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| || ||||||| | ||||| |
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| T |
39469314 |
aacaatagtctcactggtgaaattccagatgatattccttcttccatgtcactttctttcattgatctctcaagaaacaaacttcattcttttctccctt |
39469215 |
T |
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| Q |
472 |
ccaccattctttatattccaaaccttcaagttttca |
507 |
Q |
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|||||||||| | |||||||| ||||||||||||| |
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| T |
39469214 |
ccaccattctatccattccaaatcttcaagttttca |
39469179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 39469467 - 39469413
Alignment:
| Q |
251 |
atacttttcaatattgctttctctggtccaattccatcaagactaccaatgtgtt |
305 |
Q |
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||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
39469467 |
atacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtgtt |
39469413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 479
Target Start/End: Original strand, 30088631 - 30088744
Alignment:
| Q |
366 |
ttggctaacaatagtcgcactagtggaactccagatgaaattccttcttccagatcactttctttcattgatctgtcaagaaacattctccattcttcta |
465 |
Q |
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|||||||||||||||| |||| |||||| ||| || || ||| ||||||||| ||| ||||| ||||||||| | || ||||||| ||||| |||||| |
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| T |
30088631 |
ttggctaacaatagtctcactggtggaattcctgaggacattgcttcttccacatctctttcgttcattgatttctccagaaacaacctccactcttctc |
30088730 |
T |
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| Q |
466 |
acccttccaccatt |
479 |
Q |
| |
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|||||||||||| |
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| T |
30088731 |
ttccttccaccatt |
30088744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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