View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_162 (Length: 242)
Name: NF2519_low_162
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_162 |
 | |
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| [»] scaffold0719 (1 HSPs) |
| | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5312243 - 5312482
Alignment:
| Q |
1 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5312243 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
5312342 |
T |
|
| Q |
101 |
gaagacaaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaact |
200 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5312343 |
gaagacagataaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaact |
5312442 |
T |
|
| Q |
201 |
atttctgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5312443 |
atttctgttgtagtttcacctctaatactctatgcttttg |
5312482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5284572 - 5284333
Alignment:
| Q |
1 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| || | | ||| ||||| || ||||| ||||| |
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|
| T |
5284572 |
agccactagatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttatcaaaaattcgttcgtgcttgggaatcacttgttagaga |
5284473 |
T |
|
| Q |
101 |
gaagacaaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaact |
200 |
Q |
| |
|
||||||||||| ||| | | ||| ||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
5284472 |
caagacaaagaataatacaaagagtttggttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaact |
5284373 |
T |
|
| Q |
201 |
atttctgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||| |||| |
|
|
| T |
5284372 |
atttctgctgtagtttcacctcttatactttatgcttttg |
5284333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5305031 - 5305270
Alignment:
| Q |
1 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||| |||| ||||| ||||| || ||||| ||||| |
|
|
| T |
5305031 |
agccattagatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagaga |
5305130 |
T |
|
| Q |
101 |
gaagacaaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaact |
200 |
Q |
| |
|
|| ||||||||| ||| | | ||| ||||||||||||||| | | ||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
5305131 |
gaggacaaagaataatacaaagagtttggttctttggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaact |
5305230 |
T |
|
| Q |
201 |
atttctgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||| |||| |
|
|
| T |
5305231 |
atttcggttgccatttcacctcttatactctatgcttttg |
5305270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 14951382 - 14951148
Alignment:
| Q |
6 |
ttagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaaga |
105 |
Q |
| |
|
|||| |||||||||||| ||||| |||| |||||||||||||||||||||| | |||||||| |||||||| |||||||| |||||||||||||| | || |
|
|
| T |
14951382 |
ttagctcttgaagacattccttctcttgtttctgaagatgaagcagacatggcctatcaaaaatttgcgcaagcatgggaatcccttgtaagagaaagga |
14951283 |
T |
|
| Q |
106 |
caaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttc |
205 |
Q |
| |
|
| ||||| || | | ||| ||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
14951282 |
ctaagaacgatacgaagagtttggttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagc |
14951183 |
T |
|
| Q |
206 |
tgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |
|
|
| T |
14951182 |
tgttgtagtttcacctctgatactctatgcttttg |
14951148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15124280 - 15124519
Alignment:
| Q |
1 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
100 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||| |||||||||||||||| ||||| | ||| |||| |||| ||||| ||||| || ||||| ||||| |
|
|
| T |
15124280 |
agccactagctcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagaga |
15124379 |
T |
|
| Q |
101 |
gaagacaaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaact |
200 |
Q |
| |
|
|| ||| ||||| ||| | | ||| ||||||||||||||| | ||||| | ||| |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
15124380 |
gaggactaagaacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaact |
15124479 |
T |
|
| Q |
201 |
atttctgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15124480 |
atagctgttgtagtttcacctctaatactctatgcttttg |
15124519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 5292059 - 5291828
Alignment:
| Q |
9 |
gatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacaa |
108 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||| |||||| | |||||||| |||| |||| ||||| || ||||| ||||||| ||||| |
|
|
| T |
5292059 |
gatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtgagagagaggacaa |
5291960 |
T |
|
| Q |
109 |
agaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaactatttctgt |
208 |
Q |
| |
|
|||| ||| | | ||| ||||||||||||||| | ||||||||| ||| |||||||||||| |||||||||||||||||||| | |||||| |||| || |
|
|
| T |
5291959 |
agaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggt |
5291860 |
T |
|
| Q |
209 |
tgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
|| |||||||||||| ||||||||||| |||| |
|
|
| T |
5291859 |
tgcagtttcacctcttatactctatgcttttg |
5291828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31528069 - 31527830
Alignment:
| Q |
1 |
agccattagatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagaga |
100 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||| |||||||||||||||| ||| | |||||||| |||| ||||| |||||| || |||| ||| | |
|
|
| T |
31528069 |
agccactagctcttgaagacatacctacccttgtttctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaatgggagtctcttggaaggaa |
31527970 |
T |
|
| Q |
101 |
gaagacaaagaaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattactcagaact |
200 |
Q |
| |
|
|| || ||||| | | | | | ||||||||||||||| | ||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
31527969 |
gaggagtaagaacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaact |
31527870 |
T |
|
| Q |
201 |
atttctgttgtagtttcacctctaatactctatgcctttg |
240 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
31527869 |
atttctgttgtagttttacctctaattctctatgcttttg |
31527830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 21177786 - 21177723
Alignment:
| Q |
172 |
taatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatactctatgc |
235 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
21177786 |
taatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgc |
21177723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 21260198 - 21260087
Alignment:
| Q |
126 |
ttggttctttggtctgttattagaacttacttaaaa----gaaaacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacct |
221 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||| ||||||| | ||| || |||||||||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
21260198 |
ttggttctttggtctatagttagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacct |
21260099 |
T |
|
| Q |
222 |
ctaatactctat |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21260098 |
ctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 21264026 - 21263965
Alignment:
| Q |
165 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaat |
226 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
21264026 |
aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaat |
21263965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 21297880 - 21297818
Alignment:
| Q |
165 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaata |
227 |
Q |
| |
|
|||||| |||||||| ||||||||| | |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
21297880 |
aacatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcacatctaata |
21297818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 21109210 - 21109146
Alignment:
| Q |
165 |
aacatagtaatagcattttatgcattactcagaactatttctgttgtagtttcacctctaatact |
229 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| || || ||||| |||| ||||||||||| |||| |
|
|
| T |
21109210 |
aacatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctctattact |
21109146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5951 - 5899
Alignment:
| Q |
127 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
179 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5951 |
tggttctttggtctctagttagaactaacttaaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 61275 - 61327
Alignment:
| Q |
127 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
179 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
61275 |
tggttctttggtttgtagttagaactaacttaaaagaaaacataataatagca |
61327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 39713 - 39765
Alignment:
| Q |
127 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
179 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
39713 |
tggttctttggtctgcagttagaactaacttaaaagaaaacataataacagca |
39765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 11831754 - 11831717
Alignment:
| Q |
197 |
aactatttctgttgtagtttcacctctaatactctatg |
234 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
11831754 |
aactatttctattgtagtttcacctctaatactatatg |
11831717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 20024 - 19972
Alignment:
| Q |
127 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
179 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
20024 |
tggttctttggtctgtagttagaactattttaaaagaaaacataataatagca |
19972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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