View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_163 (Length: 240)
Name: NF2519_low_163
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_163 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 46128553 - 46128455
Alignment:
| Q |
142 |
agcagagaattagagaagaaaacgtggagttcaagtttcagtgaagatgtaacaaaatcaatgaacgagtgnnnnnnnctctcttctatataacagctt |
240 |
Q |
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| T |
46128553 |
agcagagaattagagaagaaaacgtggagttcaagtttcagtgaagatgtaacaaaatcaatgaacgagtgtttttctctctcttctatataacagctt |
46128455 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 46701322 - 46701224
Alignment:
| Q |
142 |
agcagagaattagagaagaaaacgtggagttcaagtttcagtgaagatgtaacaaaatcaatgaacgagtgnnnnnnnctctcttctatataacagctt |
240 |
Q |
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| T |
46701322 |
agcagagaattagagaagaaaacgtggagttcaagtttcagtgaagatgtaacaaaatcaatgaacgagtgtttttttctctcttctatataacagctt |
46701224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 46701435 - 46701345
Alignment:
| Q |
20 |
ctccggtgaccatcttccgactcaactccggtagaggcattcttcctctgagacgaggaggatgat---gaagtatcagctctcagagaca |
107 |
Q |
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| T |
46701435 |
ctccgatgaccatcttccgactcaactccggtagaggcattcttcctctgagacgaggaggatgatgaagaagtatcagctctaagagaca |
46701345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 46128670 - 46128580
Alignment:
| Q |
20 |
ctccggtgaccatcttccgactcaactccggtagaggcattcttcctctgagacgaggagga---tgatgaagtatcagctctcagagaca |
107 |
Q |
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| T |
46128670 |
ctccgatgaccatcttccgactcaactccggtagagacattcttcctctgagatgaggaggatgctgaagaagtatcatctctcagagaca |
46128580 |
T |
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