View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_164 (Length: 239)
Name: NF2519_low_164
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_164 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 37535405 - 37535197
Alignment:
| Q |
16 |
atccaatttagttaaaaatatatatgtaatataacaatttagaaaaatgctatttcaagcaaaatagcactatcacaagtatttcacgaaacatgtggca |
115 |
Q |
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| T |
37535405 |
atccaatttagttaaaaatatatatgtaatataacaatttagaaaaatgctatttcaagcaaaataacactatcacgagtatttcacgaaacatgtggca |
37535306 |
T |
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| Q |
116 |
tgtatgccatccatcaatttccatatttttctccccactttccataatttccgctaatagatattttttattggcttgttttcattcttgatagattcgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
37535305 |
tgtatgccatccatcaatttccatatttttctcctcactttccataatttccgctaacagatgtttttgattggcttgttttcattcttgatggattcgg |
37535206 |
T |
|
| Q |
216 |
tataatact |
224 |
Q |
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||||||||| |
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| T |
37535205 |
tataatact |
37535197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 224
Target Start/End: Complemental strand, 862136 - 861960
Alignment:
| Q |
59 |
aaaatgctatttcaagcaaaatagcactatcacaagtatttcacgaaacatgtggcatgtatgccatccatcaa-----------tttccatatttttct |
147 |
Q |
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| T |
862136 |
aaaatgctatttcaagcgaaatagcactatcccgagtatttcacggcacatgtggcatgtatgtcactcatccactagtttatgatttccatctttttct |
862037 |
T |
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| Q |
148 |
ccccactttccataatttccgctaatagatattttttattggcttgttttcattcttgatagattcggtataatact |
224 |
Q |
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| T |
862036 |
ccccacctcccatgatttccgctcacagctgctttttattggcttgttttcattcttgattgattcgggataatact |
861960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 20614877 - 20614785
Alignment:
| Q |
132 |
atttccatatttttctccccactttccataatttccgctaatagatattttttattggcttgttttcattcttgatagattcggtataatact |
224 |
Q |
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|||||||| ||||||||||||| | |||| ||||||||| | | | ||||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
20614877 |
atttccatctttttctccccacctcccatgatttccgctcacatctgctttttattgacttgtttttattcttgatagattcgggataatact |
20614785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 37043464 - 37043388
Alignment:
| Q |
132 |
atttccatatttttctcccc-actttccataatttccgctaatagatattttttattggcttgttttcattcttgat |
207 |
Q |
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| T |
37043464 |
atttccatctttttctcccccacctcccatgatttccactaacagctgtttttaattggcttattttcattcttgat |
37043388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 5013767 - 5013700
Alignment:
| Q |
57 |
gaaaaatgctatttcaagcaaaatagcactatcacaagtatttcacgaaacatgtggcatgtatgcca |
124 |
Q |
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|||||||||||||| |||| ||||| ||||||| ||| |||||||| | ||||||||||||||||||| |
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| T |
5013767 |
gaaaaatgctatttaaagcgaaataacactatcccaaatatttcaccacacatgtggcatgtatgcca |
5013700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 24255189 - 24255100
Alignment:
| Q |
132 |
atttccatatttttctccccactttccataatttccgctaatagatattttttattggcttgttttcattcttgatagattcggtataat |
221 |
Q |
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|||||||| |||||||| |||| | |||| |||||| || | | || ||||||||||||||||||||||| |||| || |||| ||||| |
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| T |
24255189 |
atttccatctttttctctccacctcccatgatttcctctcaaaactactttttattggcttgttttcattcgtgattgagtcgggataat |
24255100 |
T |
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