View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_166 (Length: 239)
Name: NF2519_low_166
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_166 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 933017 - 933234
Alignment:
| Q |
18 |
atgattgtggtagaaatttgaaggnnnnnnncgtagatttcataggatatgatctaatgcacagtaaatagaagtgctacatatataatttgaactagat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
933017 |
atgattgtggtagaaatttgaagaaaaaaaacgtagatttcataggatatgatctaatgcacagtaaatagaagtgctacatatataatttgaactagat |
933116 |
T |
|
| Q |
118 |
accttgtcaacctacatatttcttttgtaattaatcaataataatttttaagaaaatgttcttcagtataaagaatggttcattacaaattagatgtaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
933117 |
accttgtcaacctacatatttcttttgtaattaatcaataataatttttaagaaaatgttctttagtataaagaatggttcattacaaattagatgtaaa |
933216 |
T |
|
| Q |
218 |
atagttccgcaaacacaa |
235 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
933217 |
atagtttcgcaaacacaa |
933234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University