View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_167 (Length: 239)
Name: NF2519_low_167
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_167 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5178397 - 5178208
Alignment:
| Q |
1 |
aatataaggtgatagttttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctctttacttagaagggcatgcttac |
100 |
Q |
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| T |
5178397 |
aatataaggtgatagttttaacttgaggttctaa-ctcttatactgacaattttttctttttaaattgtacaaggtctttacttagaagggcatgcttac |
5178299 |
T |
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| Q |
101 |
ttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt |
191 |
Q |
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| T |
5178298 |
ttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt |
5178208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 52008592 - 52008403
Alignment:
| Q |
1 |
aatataaggtgatagttttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctctttacttagaagggcatgcttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || |||| ||| || || |||||| |||||||||||||| | ||| || |
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| T |
52008592 |
aatataaggtgatagttttaacttgaggttctaa-ctcatagactggcaattttttctttttaatttatacaagatctttacttagaagagaatgatttt |
52008494 |
T |
|
| Q |
101 |
ttgcttctagaacttcaattggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt |
191 |
Q |
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| T |
52008493 |
ttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaatttgatgatgggaaattttgatt |
52008403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 5175000 - 5174955
Alignment:
| Q |
194 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttat |
239 |
Q |
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| T |
5175000 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttat |
5174955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 52002800 - 52002755
Alignment:
| Q |
194 |
cgttaaacaaaaaagtaacatcattagattaatcaatgtattttat |
239 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
52002800 |
cgttaaacaaaaaagtaacataataagattaatcaaggtattttat |
52002755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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