View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_169 (Length: 239)

Name: NF2519_low_169
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_169
NF2519_low_169
[»] chr8 (2 HSPs)
chr8 (1-223)||(5311889-5312111)
chr8 (4-222)||(5304693-5304896)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5312111 - 5311889
Alignment:
Q  1 tcggggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaattactgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5312111 tcggggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaaatactgtcc 5312012  T
Q  101 atgaatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcagtctttgctttatataaaatctggaatcatgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5312011 atgaatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcattctttgctttatataaaatctggaatcatgg 5311912  T
Q  201 tttgtgacatgcatgaatcatac 223  Q
    |||||||||||||||||||||||    
T  5311911 tttgtgacatgcatgaatcatac 5311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 5304896 - 5304693
Alignment:
Q  4 gggacaccatgagttcctatatgaccaagattttataaaaaggctcaaaataacaacaatcaaattttagtgttttgaacttaataaattactgtccatg 103  Q
    |||||||||||||||||||||| ||||      | |||| |||| ||||  | ||||||||||| |||||||| ||||||||| |||| ||||||||||     
T  5304896 gggacaccatgagttcctatataacca------tttaaacaggcacaaagaagcaacaatcaaagtttagtgtcttgaacttagtaaaatactgtccata 5304803  T
Q  104 aatttcaacaatcatagtcaaatgtgcaagaaagaagatacattcatgaactgcatgaacaagcagtctttgctttatataaaatctggaatcatggttt 203  Q
    || |||||||| ||||||||| |||||||||||  ||||  ||||||||||         ||| | ||||| ||||||||||| ||||||||||||||||    
T  5304802 aaattcaacaaccatagtcaactgtgcaagaaacgagatgaattcatgaac---------aagtaatctttactttatataaattctggaatcatggttt 5304712  T
Q  204 gtgacatgcatgaatcata 222  Q
    |||||||||||||||||||    
T  5304711 gtgacatgcatgaatcata 5304693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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