View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_17 (Length: 522)

Name: NF2519_low_17
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_17
NF2519_low_17
[»] chr8 (4 HSPs)
chr8 (216-463)||(40977232-40977479)
chr8 (12-181)||(40977026-40977196)
chr8 (216-289)||(11537256-11537329)
chr8 (223-283)||(26442016-26442076)
[»] chr3 (2 HSPs)
chr3 (216-291)||(30952566-30952641)
chr3 (216-291)||(30968378-30968453)
[»] chr7 (5 HSPs)
chr7 (216-290)||(23424403-23424477)
chr7 (216-290)||(23427849-23427923)
chr7 (216-291)||(29218214-29218289)
chr7 (216-291)||(31656828-31656903)
chr7 (223-283)||(48918562-48918622)
[»] chr5 (1 HSPs)
chr5 (216-291)||(34693760-34693835)
[»] chr2 (2 HSPs)
chr2 (216-289)||(1211732-1211805)
chr2 (223-283)||(2388814-2388874)
[»] scaffold0971 (1 HSPs)
scaffold0971 (223-283)||(1343-1403)
[»] chr6 (1 HSPs)
chr6 (223-283)||(29022869-29022929)
[»] chr4 (4 HSPs)
chr4 (223-283)||(23458696-23458756)
chr4 (223-283)||(42636399-42636459)
chr4 (223-283)||(56191440-56191500)
chr4 (223-283)||(56435063-56435123)
[»] chr1 (1 HSPs)
chr1 (223-283)||(45765002-45765062)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 216 - 463
Target Start/End: Original strand, 40977232 - 40977479
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaacttatgatgagtttctctttagaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  40977232 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaacttgtgatgagtttctcttcagaa 40977331  T
Q  316 tctatataatcttcttttcattatttttgtccagactgaactaaaacaacagaacctttcttctcttctcaaaattctttttcatatattggaaagagga 415  Q
      ||||||||||  |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40977332 gttatataatctcatttttattgtttttgtccagactgatctaaaacaacagaacctttcttctcttctcaaaattctttttcatatattggaaagagga 40977431  T
Q  416 cttannnnnnnnnnnnnaattaattcaagtgtcataatggtcatttta 463  Q
    |||              |||||||||||||||||||||||||||||||    
T  40977432 cttttttttttttttttaattaattcaagtgtcataatggtcatttta 40977479  T

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Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 40977026 - 40977196
Alignment:
Q  12 atgaaatataagcaaccttgaagttgaaaagagtgagagttgaagagaagctctgaaaatcatcatcgtgtttt-gttttggattggattggattggatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  40977026 atgaaatataagcaaccttgaagttgaaaagagtgagagttgaagagaagctctgaaaatcatcatcgtgtttttgttttgttttggattggattggatt 40977125  T
Q  111 ggggggaagagaagcaaccttgagaggagggttttactgaatcaatgaataccacctacacggtaattatc 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40977126 ggggggaagagaagcaaccttgggaggagggttttactgaatcaatgaataccacctacacggtaattatc 40977196  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 11537329 - 11537256
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 289  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11537329 tgtctgagcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 11537256  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 26442016 - 26442076
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  26442016 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 26442076  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 30952566 - 30952641
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30952566 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 30952641  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 30968378 - 30968453
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30968378 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 30968453  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 23424403 - 23424477
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23424403 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 23424477  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 23427849 - 23427923
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 290  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427849 tgtctgagcccgggtttgaatcggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagaca 23427923  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 29218214 - 29218289
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 291  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29218214 tgtctgagcccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 29218289  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 31656828 - 31656903
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 291  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||    
T  31656828 tgtctgagcccaggttcgaactggggacctttagtgtgtgagactaacgtgataaccaactacaccacccagacaa 31656903  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 48918562 - 48918622
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  48918562 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 48918622  T

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Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 34693760 - 34693835
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagacaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34693760 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccaactacaccacccagacaa 34693835  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 1211732 - 1211805
Alignment:
Q  216 tgtctgagcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 289  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1211732 tgtctgaacccaggttcgaactggggacctctagtgtgtgagactagcgtgataaccgactacaccacccagac 1211805  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 2388874 - 2388814
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  2388874 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 2388814  T

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Target: scaffold0971 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 1343 - 1403
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  1343 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 1403  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 29022929 - 29022869
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  29022929 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 29022869  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 23458696 - 23458756
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  23458696 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 23458756  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 42636459 - 42636399
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  42636459 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 42636399  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 56191440 - 56191500
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  56191440 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 56191500  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 56435123 - 56435063
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  56435123 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 56435063  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 45765002 - 45765062
Alignment:
Q  223 gcccgggttcgaaccggggacctctagtgtgtgagactagcgtgataaccgactacaccac 283  Q
    ||||||||||||||||| |||||  ||||||| |||||  |||||||||| ||||||||||    
T  45765002 gcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccac 45765062  T

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