View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_173 (Length: 237)

Name: NF2519_low_173
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_173
NF2519_low_173
[»] chr3 (2 HSPs)
chr3 (1-162)||(31148439-31148600)
chr3 (156-221)||(31148627-31148692)
[»] chr4 (2 HSPs)
chr4 (156-221)||(16502611-16502676)
chr4 (156-197)||(40020655-40020696)
[»] chr2 (2 HSPs)
chr2 (156-217)||(37422868-37422929)
chr2 (173-221)||(28104454-28104502)
[»] chr1 (1 HSPs)
chr1 (166-221)||(11046933-11046989)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 31148439 - 31148600
Alignment:
Q  1 ttaccctaggttgataagattttgttttgatgttgtgaaggaggaattgcctaatgatctagaaagagtggatgtgctatttcaggatgcggtggaggct 100  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  31148439 ttactctaggttgataagattttgttttaatattgtgaaggaggaattgcctaatgatctagaaagagtggatatgctgtttcaggatgcggtggaggct 31148538  T
Q  101 ggaattgatatacaagtatgcttcaccttttttattgaatcccccaagtataattccaagaa 162  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  31148539 ggaattgatatacaggtatgcttcaccttttttattgaatcccccaggtataattctaagaa 31148600  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 31148627 - 31148692
Alignment:
Q  156 ccaagaatttaattcctaagaaagaacgcttttattaagaaatgtgaaagaataggagagaaatct 221  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31148627 ccaagaattcaatttctaagaaagaacgcctttattaagaaatgtgaaagaataggagagaaatct 31148692  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 16502676 - 16502611
Alignment:
Q  156 ccaagaatttaattcctaagaaagaacgcttttattaagaaatgtgaaagaataggagagaaatct 221  Q
    |||||||||  |||| | ||||||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  16502676 ccaagaattggattctttagaaagaacacttatattaagaaatatgatagaataggagagaaatct 16502611  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 40020655 - 40020696
Alignment:
Q  156 ccaagaatttaattcctaagaaagaacgcttttattaagaaa 197  Q
    |||||||||  |||||||||||||||| ||||||||||||||    
T  40020655 ccaagaattggattcctaagaaagaacacttttattaagaaa 40020696  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 37422868 - 37422929
Alignment:
Q  156 ccaagaatttaattcctaagaaagaacgcttttattaagaaatgtgaaagaataggagagaa 217  Q
    |||| |||| |||||| |||||||||| ||||||| |||||||  || ||||||||||||||    
T  37422868 ccaaaaattgaattccaaagaaagaacacttttatgaagaaataggatagaataggagagaa 37422929  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 28104454 - 28104502
Alignment:
Q  173 aagaaagaacgcttttattaagaaatgtgaaagaataggagagaaatct 221  Q
    |||||||||| |||||||||||| ||  ||||||||| |||||||||||    
T  28104454 aagaaagaactcttttattaagagataggaaagaatacgagagaaatct 28104502  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 11046989 - 11046933
Alignment:
Q  166 aattcctaagaaagaacgcttttattaag-aaatgtgaaagaataggagagaaatct 221  Q
    |||||||||| |||||| ||||||||||| ||||  |||||||||||||| ||||||    
T  11046989 aattcctaaggaagaactcttttattaagaaaataggaaagaataggagataaatct 11046933  T

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