View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_184 (Length: 230)
Name: NF2519_low_184
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_184 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 46700966 - 46701199
Alignment:
| Q |
1 |
atgtgtatgctcttactaccccaaatttctgcatccgttt----aatgagcctacacagttttgtttcacgcggttcaacctcgtcagtaaccagtttaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46700966 |
atgtgtatgctcttactaccccaaatttctgcgtccgtcctcgaaatgagcctacacagttttgtttcacgcggttgaacctcgtcagtaaccagtttaa |
46701065 |
T |
|
| Q |
97 |
tattatctctgtcggttcattttcacatccaacccaaaacagttaccggttcagttgaaccggtttgagcttagttcgacgtgggataaaatattagttt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
46701066 |
tattatctctgtcggttcattttcacatccaacccaaaacagttaccggttcaactgaaccggtttgagcttagttcgacgtcggataaaatatcagttt |
46701165 |
T |
|
| Q |
197 |
gaaaatataaggaaaacagaaatgttagttaaaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46701166 |
gaaaatataaggaaaacagaaatgttagttaaaa |
46701199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 46128242 - 46128430
Alignment:
| Q |
41 |
aatgagcctacacagttttgtttcacgcggttcaacctcgtcagtaaccagtttaatattatctctgtcggttcattttcacatccaacccaaaacagtt |
140 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
46128242 |
aatgagcctacacagttttgttt-aggcagttcaaccccgttcgtaaccggtttaatattatctttgtcggttcattttcacatccaatacaaaacagtt |
46128340 |
T |
|
| Q |
141 |
accggttcagttgaaccggtttgagcttagttcgacgtgggataaaatattagtttgaaaatataaggaaaacagaaatgttagttaaaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46128341 |
accggttcagttgaaccggtttgagcttagttctacgtgagataaaatattagtttgaaaatataaggaaaacagaaatgttagttaaaa |
46128430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University