View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_185 (Length: 227)
Name: NF2519_low_185
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_185 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 7804615 - 7804390
Alignment:
| Q |
3 |
aaaaagtgtaaaaaagagatcgagtgagtgagtgaatctatgggatcacacatagaggaaattatgtagagaatacgagtaaatgggtgtagaagatcta |
102 |
Q |
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| T |
7804615 |
aaaaagtgtaacaaagagatcgagtgagtgagtgaatctatgagatcaaacattgaggaaattacgtagagaatacgagtaaatgggtgttgaagatcta |
7804516 |
T |
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| Q |
103 |
aacacatgaatttttaatgtagaagctcaacattactttccatcgtagagaaactaaaaataattacatgtcactgtatactttgttatacaa-gtttga |
201 |
Q |
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||||| ||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
7804515 |
aacacgtgaatttcttatgtagaagttcaacattattttccatcgtagagaaactaaaaataattacatgtcactatatactttgttatacaatgtttga |
7804416 |
T |
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| Q |
202 |
attacattttcattggcaagcatttt |
227 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
7804415 |
attacattctcattggcaagcatttt |
7804390 |
T |
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