View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_187 (Length: 224)
Name: NF2519_low_187
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_187 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 5985319 - 5985108
Alignment:
| Q |
13 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatcgacatttaattttcgga |
112 |
Q |
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| T |
5985319 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatcgacatttaattttcgga |
5985220 |
T |
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| Q |
113 |
agggagtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
212 |
Q |
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| T |
5985219 |
agggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
5985120 |
T |
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| Q |
213 |
tgcactcacagt |
224 |
Q |
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|||||||||||| |
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| T |
5985119 |
tgcactcacagt |
5985108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 5961013 - 5960925
Alignment:
| Q |
136 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagt |
224 |
Q |
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| T |
5961013 |
taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacagt |
5960925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 5949661 - 5949573
Alignment:
| Q |
136 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagt |
224 |
Q |
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| T |
5949661 |
taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagt |
5949573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 5921783 - 5921690
Alignment:
| Q |
136 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttg-----aattcaccacctcagtgcactcacagt |
224 |
Q |
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| T |
5921783 |
taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagt |
5921690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 30080693 - 30080761
Alignment:
| Q |
23 |
atgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacat |
91 |
Q |
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| T |
30080693 |
atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacat |
30080761 |
T |
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