View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_19 (Length: 505)
Name: NF2519_low_19
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 9973554 - 9974048
Alignment:
| Q |
1 |
attcaagactccaattctttaacttcaatagaatttcttggaaacgcaatttttattctgagaaaaggtagagtgtcggaatcatatgtttgtggaaaaa |
100 |
Q |
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| T |
9973554 |
attcaagactccaattctttaacttcaatagaatttcttggaaacgcaatttttattctgagaaaaggtagagtgtgggaatcatatgtttgtggaaaaa |
9973653 |
T |
|
| Q |
101 |
ttgtgcctttcattgaggatacaatgaacaaggttgcatggagttcaagcaccgaaagtgtgccattttgaaagaagaagggcagaattggaggcaacag |
200 |
Q |
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| T |
9973654 |
ttgtgccttacaatgaggatacaatgaacaaggttgcatggagttcaagcaccgaaagtgtgccatgttgaaagaagaaggacatatttggaggcaacag |
9973753 |
T |
|
| Q |
201 |
ggaag---gacccttgaaggaaatcaaggacgcattgtgtgtttccgaagcgggtttaat-aagcacgtcgaagaatggttgcttagaaaattttctcaa |
296 |
Q |
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| T |
9973754 |
ggaagaaggacccttgaaggaaatcaaggacgcattgtgtgtttccgaagcgggtttaatgaagcatgtcgaagggtggttgcttagaaaattttctcaa |
9973853 |
T |
|
| Q |
297 |
aaagatacgaagccactagaaaaagcttggggaacatattttgtttctaatttcgaaaattatggaaatgccttgtaattcaaattggttaccgcggtat |
396 |
Q |
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| T |
9973854 |
aaagatacgaagctactacaaaaagcttggggaacatattttgtttctaattttgaaaattatggaaatgccttgtaattcaaattggttaccgcgatat |
9973953 |
T |
|
| Q |
397 |
ctgtgcaagcaattcttgaaaaataagacatcaatgtgtggaggatagatgctaatgatttgaagagactagccaatgaaaatcgagctggattt |
491 |
Q |
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| T |
9973954 |
ctgtgcaagcaattcttgaaaaataagacatcaatgtgtggaggatagatgctaatgttttgaagagactagccaatgaaaatcgagctggattt |
9974048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 39069556 - 39070044
Alignment:
| Q |
1 |
attcaagactccaattctttaacttcaatagaatttcttggaaacgcaattt-ttattctgagaaaaggtagagtgtcggaatcatatgtttgtggaaaa |
99 |
Q |
| |
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|||||||| |||||| || || | |||| |||||||||| |||| |||||| || |||| ||||||| || |||| ||||||||||||| ||||||| |
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| T |
39069556 |
attcaagattccaatcattcaattgcaattgaatttcttgtaaacacaatttctttttcttggaaaaggaagtgtgtgggaatcatatgttcatggaaaa |
39069655 |
T |
|
| Q |
100 |
attgtgcctttcattgaggatacaatgaacaaggttgcatggagttcaagcaccgaaagtgtgccattttgaaagaagaagggcagaattggaggcaac- |
198 |
Q |
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| T |
39069656 |
ttggtgccttttgatgagaatacaatcaacaatgta-cttggagttcaagcaccgaaaatgtgccatgttgaaagaagaagggtggaattggaagagact |
39069754 |
T |
|
| Q |
199 |
agggaag---gacccttgaaggaaatcaaggacgcattgtgtgtttccgaagcgggtttaat-aagcacgtcgaagaatggttgcttagaaaattttctc |
294 |
Q |
| |
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||||||| ||| ||||||||||||||||| || |||||||| |||||||| ||| | ||||| || |||| ||| || | |||||||||||||| |
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| T |
39069755 |
agggaagagggacttttgaaggaaatcaaggatgcgttgtgtgtacccgaagcgagttggttgaagcatgtggaaggatgttttcctagaaaattttctc |
39069854 |
T |
|
| Q |
295 |
aaaaagatacgaagccactagaaaaagcttggggaacatattttgtttctaatttcgaaaattatggaaatgccttgtaattcaaattggttaccgcggt |
394 |
Q |
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|||| |||| || || ||||| |||||||||||||||||| |||||||||||||| |||| || ||| ||||| | ||||||||||||| ||| || | |
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| T |
39069855 |
aaaaggatatgaggcgactagcaaaagcttggggaacatagtttgtttctaatttagaaagttgtgggaatgcttcaaaattcaaattggtcaccacgat |
39069954 |
T |
|
| Q |
395 |
atctgtgcaagcaattcttgaaaaataagacatcaatgtgtggaggatagatgctaatgatttgaagagactagccaatgaaaatcgagc |
484 |
Q |
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||| ||| ||||| |||||| | ||||||| | ||| |||||||| ||| ||||| ||||| || ||| || ||||||||||||| |
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| T |
39069955 |
tggtgtacaaacaattattgaaagagaagacataagcgtggggaggataattgcaaatgacttgaaaaggctacccgatgaaaatcgagc |
39070044 |
T |
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