View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_190 (Length: 215)
Name: NF2519_low_190
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_190 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 39296430 - 39296612
Alignment:
| Q |
15 |
aagggaaaaacaaaaggacaccgaaaataaagaagttttatgcattcttttcaaagaacaaaaattttgaatttaaaaactggccacgaaccaacacaat |
114 |
Q |
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| T |
39296430 |
aagggaaaaacaaaaggacaccgaaaataaagaagttttatgcattcttttcaaagaacaaaaattttgaatttaaaaactggccacgaaccaacacaat |
39296529 |
T |
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| Q |
115 |
tcaagagaagatcataatttgagtcttcaaaagaacatctcccaacaggtaaatgcttttgacaatagtcaataagaaatcag |
197 |
Q |
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| T |
39296530 |
tcaagagaagatcataatttgagtcttcaaaagaacatctcccaacaggtaaatgcttttgacaatagtcaataagaaatcag |
39296612 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 38228988 - 38229054
Alignment:
| Q |
100 |
acgaaccaacacaattcaagagaagatcataattt-gagtcttcaaaagaacatctcccaacaggta |
165 |
Q |
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| T |
38228988 |
acgaaccaatacaattcaagcgaacatcatcattttgagtcttcaagagaacatctcccaacaggta |
38229054 |
T |
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