View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_192 (Length: 213)
Name: NF2519_low_192
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_192 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 29734060 - 29734272
Alignment:
| Q |
1 |
atttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgataatgatggatcat |
100 |
Q |
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| T |
29734060 |
atttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgataacgatggatcat |
29734159 |
T |
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| Q |
101 |
tctcttggttttggatgccttgttgggacaatattccaagtcctattattattagtattttgattagagcacgacgatacttggttttgtccatcaaaac |
200 |
Q |
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| T |
29734160 |
tctcttggttttggatgccttgttgggacaatattccaattccaattattattagtattttgattagagcacgacgatacttggttttgtccatcaaaac |
29734259 |
T |
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| Q |
201 |
cctgttgtgtact |
213 |
Q |
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|||| |||||||| |
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| T |
29734260 |
cctgctgtgtact |
29734272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 29746155 - 29746080
Alignment:
| Q |
7 |
aagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
82 |
Q |
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| T |
29746155 |
aagtgttttttcttttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcagata |
29746080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29607007 - 29607087
Alignment:
| Q |
1 |
atttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggata |
82 |
Q |
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| T |
29607007 |
atttggaagtgtttttttt-ttctgcaacatccttgtagacaactccatattttgtcttccagtgttcgaatctttcggata |
29607087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 30057161 - 30057252
Alignment:
| Q |
22 |
tctgcaacatccttgtagacaactccatattttgtcttccagtactcgaatctttcggataatgataatgatggatcattctcttggttttg |
113 |
Q |
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|||||| |||||||||||| |||| ||| ||| ||||||||| || | ||| ||| |||| || ||| ||| ||||||||||||||||||| |
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| T |
30057161 |
tctgcatcatccttgtagatcactctatactttatcttccagtgcttgtatcgttctgatagtgttaaagattgatcattctcttggttttg |
30057252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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