View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_193 (Length: 211)

Name: NF2519_low_193
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_193
NF2519_low_193
[»] chr3 (1 HSPs)
chr3 (19-196)||(27208195-27208372)
[»] chr8 (7 HSPs)
chr8 (106-194)||(21400656-21400744)
chr8 (106-194)||(21795149-21795237)
chr8 (98-167)||(10364432-10364501)
chr8 (98-196)||(29669797-29669895)
chr8 (15-57)||(33229381-33229423)
chr8 (15-56)||(21400518-21400559)
chr8 (15-56)||(21795011-21795052)
[»] chr2 (2 HSPs)
chr2 (104-196)||(19989855-19989947)
chr2 (114-196)||(36340557-36340639)
[»] chr7 (2 HSPs)
chr7 (15-57)||(10525187-10525229)
chr7 (105-189)||(2837639-2837723)
[»] chr5 (1 HSPs)
chr5 (57-89)||(20161101-20161133)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 27208372 - 27208195
Alignment:
Q  19 aattgccaatatgtgaacttttcctctttggaaatgatgggattagacccgtagatgactcttttggtgtatatcccacccttttttggaggtgaagaca 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||    
T  27208372 aattgccaatacgtgaacttttcctctttggaaatgatgggattagacccatagatgactcttttggtgtagaccccaccctttcttggaggtggagaca 27208273  T
Q  119 acattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggacttttttga 196  Q
    |||||||||||| | | |||| |  |||||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  27208272 acattgtgtcttctgtgaatgctgattgatgcatcacttctttgatgtgaaatttcattttataagagacttttttga 27208195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 21400656 - 21400744
Alignment:
Q  106 ggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggactttttt 194  Q
    ||||||| |||||||||| |||||| || |||||  | |||||||||||||||||| ||||||| ||| ||||| |||||||| |||||    
T  21400656 ggaggtggagacaacattatgtcttatagaaatgacagttgatgcatcacctcttttatgtgaagtttcattttgtaagggaccttttt 21400744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 21795149 - 21795237
Alignment:
Q  106 ggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggactttttt 194  Q
    ||||||| |||||||||| |||||| || |||||  | |||||||||||||||||| ||||||| ||| ||||| |||||||| |||||    
T  21795149 ggaggtggagacaacattatgtcttatagaaatgacagttgatgcatcacctcttttatgtgaagtttcattttgtaagggaccttttt 21795237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 10364501 - 10364432
Alignment:
Q  98 ccttttttggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtg 167  Q
    ||||| ||||||||| ||||||||||||||||| || ||||| ||  ||| |||||||||||||||||||    
T  10364501 cctttcttggaggtggagacaacattgtgtcttctagaaatgctagctgacgcatcacctctttgatgtg 10364432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 29669895 - 29669797
Alignment:
Q  98 ccttttttggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggacttttttga 196  Q
    ||||| ||||||||| |||||||||| ||| ||    ||| | || || ||||||||||||||||||||| | ||| ||||| ||||||| ||||||||    
T  29669895 cctttcttggaggtggagacaacattttgtattccggaaacgctagttaatgcatcacctctttgatgtggagtttcattttgtaagggatttttttga 29669797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 33229423 - 33229381
Alignment:
Q  15 gatgaattgccaatatgtgaacttttcctctttggaaatgatg 57  Q
    ||||||||||||| || || |||||||||||||||||||||||    
T  33229423 gatgaattgccaacatatgcacttttcctctttggaaatgatg 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 21400518 - 21400559
Alignment:
Q  15 gatgaattgccaatatgtgaacttttcctctttggaaatgat 56  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||    
T  21400518 gatgaattgtcaataagtgcacttttcctctttggaaatgat 21400559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 21795011 - 21795052
Alignment:
Q  15 gatgaattgccaatatgtgaacttttcctctttggaaatgat 56  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||    
T  21795011 gatgaattgtcaataagtgcacttttcctctttggaaatgat 21795052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 19989947 - 19989855
Alignment:
Q  104 ttggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggacttttttga 196  Q
    |||||| ||||||||||||| |||||| |  ||||| || |||| ||||||||||||||||||| | ||| ||||| ||| ||||||||||||    
T  19989947 ttggagatgaagacaacattatgtcttgttgaaatgctagttgacgcatcacctctttgatgtggagtttcattttgtaaaggacttttttga 19989855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 36340639 - 36340557
Alignment:
Q  114 agacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggacttttttga 196  Q
    ||||||||||||||||| || ||||| || || || |||||||||||| ||||||| ||| ||||| |||| || ||||||||    
T  36340639 agacaacattgtgtcttgtagaaatgctagttaatacatcacctctttaatgtgaagtttcattttgtaagagatttttttga 36340557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 10525187 - 10525229
Alignment:
Q  15 gatgaattgccaatatgtgaacttttcctctttggaaatgatg 57  Q
    ||||||||||||| | ||| |||||||||||||||||||||||    
T  10525187 gatgaattgccaacacgtgcacttttcctctttggaaatgatg 10525229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 2837723 - 2837639
Alignment:
Q  105 tggaggtgaagacaacattgtgtcttttataaatgttatttgatgcatcacctctttgatgtgaaattttattttataagggact 189  Q
    |||||||| |||||||||||| |||| |  | ||| || |||||||||||| | ||||||||| | ||| ||||| |||||||||    
T  2837723 tggaggtggagacaacattgtatcttatggatatgctagttgatgcatcacttttttgatgtggagtttcattttgtaagggact 2837639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 20161101 - 20161133
Alignment:
Q  57 gggattagacccgtagatgactcttttggtgta 89  Q
    |||||| ||||||||||||||||||||||||||    
T  20161101 gggatttgacccgtagatgactcttttggtgta 20161133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University