View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_196 (Length: 210)
Name: NF2519_low_196
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_196 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 53762972 - 53762787
Alignment:
| Q |
18 |
gatctgagggaagaacacgattcactcaccgatcgtatgaaaaatatcaagacttcattgcttcacgaagcttctcaagattccactggtctcttcgctt |
117 |
Q |
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| T |
53762972 |
gatctgagggaagaacacgattcactcaccgatcgtatgaaaaatatcaagacttcattgcttcacgaagcttctcaagattccactggtctcttcgctt |
53762873 |
T |
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| Q |
118 |
ctcgccttcgtagtctcttcaatgaatagcaatcattctacttcccgtgagtattttctctgctacatgatttctctgctcctcct |
203 |
Q |
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| T |
53762872 |
ctcgccttcgtagtctcttcaatgaatagcaatcattctacttcccgtgagtattttctatgctacatgatttctcagctcctcct |
53762787 |
T |
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Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 18811023 - 18811109
Alignment:
| Q |
109 |
tcttcgcttctcgccttcgtagtctcttcaatgaatagcaatcattctacttcccgtgagtattttctctgctacatgatttctctg |
195 |
Q |
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| T |
18811023 |
tcttcgcttctcaccttcgtagtcacttcaatgaatagcaatgattgttcttcccgtgagttcgttctctgctacatgatttctctg |
18811109 |
T |
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