View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_22 (Length: 494)
Name: NF2519_low_22
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 25 - 471
Target Start/End: Complemental strand, 43764074 - 43763637
Alignment:
| Q |
25 |
ataaaggacactagaggaaataaacaaggttgattgacatgtaatatggacaattgattttgctcaaggtagaaggtaggatttgttgcttattaaagtt |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43764074 |
ataaaggaccgtagaggaaataaacaaggttgattgacatgtaatatggacaattgattttgctcaaggtagaaggtaggatttgttgcttattaaagtt |
43763975 |
T |
|
| Q |
125 |
aattcgagtgggcaaaaagtgattcagttaaaaaagaaccaaaaaaccttgtaacatggtcaaatcatgtttgagttttgactatttgaaactcgcgttt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43763974 |
aattcgagtgggcaaaaagtgattcagttaaaaa-gaaccaaaaaaccttgtaacatggtcaaatcatgtttgagttttgactatttgaaactcgcgttt |
43763876 |
T |
|
| Q |
225 |
aaagacattgtaataagtgtgtcgttgctagactatttgaaacaaaaagaataattgcaaataagatctattgatnnnnnnnncaattacaaatccaaaa |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43763875 |
aaagactttgtaataagtgtgtcgttgctagactatttgaaacaaaaagaataattgcaaataagatctattgat-aaaaaaacaattacaaatccaaaa |
43763777 |
T |
|
| Q |
325 |
aattatgtttgattataatagnnnnnnnnnnnnngagcaaaatgtttgattataatagttttgacttttgaatacatattaatgtgacaaaaataataag |
424 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43763776 |
atttatgtttgattataatagtttttctttttttgagcaaaatgtttgattataatag-------ttttgaatacatattaatgtgacaaaaataataag |
43763684 |
T |
|
| Q |
425 |
tagagtttaattttgatatcgtgcaagtgcaaaagaaattacatagt |
471 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
43763683 |
tagagtttaattttaatatcctgcaagtgcaaaagaaattacatagt |
43763637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University