View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_23 (Length: 487)

Name: NF2519_low_23
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_23
NF2519_low_23
[»] chr6 (7 HSPs)
chr6 (30-466)||(34360706-34361131)
chr6 (395-436)||(8374226-8374267)
chr6 (396-433)||(11102197-11102234)
chr6 (395-431)||(9727584-9727620)
chr6 (395-431)||(14465828-14465864)
chr6 (395-431)||(22721342-22721378)
chr6 (393-429)||(31642689-31642725)
[»] chr2 (10 HSPs)
chr2 (133-291)||(5584661-5584814)
chr2 (395-431)||(36685406-36685442)
chr2 (389-431)||(16534940-16534982)
chr2 (395-436)||(10202254-10202295)
chr2 (395-436)||(31819722-31819763)
chr2 (395-431)||(7957989-7958025)
chr2 (395-431)||(15488838-15488874)
chr2 (395-431)||(18055948-18055984)
chr2 (395-431)||(19967823-19967859)
chr2 (395-431)||(43461337-43461373)
[»] chr3 (15 HSPs)
chr3 (33-130)||(25291656-25291753)
chr3 (191-327)||(25291386-25291522)
chr3 (395-433)||(6419668-6419706)
chr3 (395-436)||(43904498-43904539)
chr3 (395-431)||(46316480-46316516)
chr3 (396-433)||(23525912-23525949)
chr3 (403-436)||(29216890-29216923)
chr3 (395-436)||(47570367-47570408)
chr3 (395-436)||(49285592-49285633)
chr3 (395-431)||(11250047-11250083)
chr3 (395-435)||(20625655-20625695)
chr3 (395-431)||(35359806-35359842)
chr3 (395-431)||(35966331-35966367)
chr3 (395-431)||(36518189-36518225)
chr3 (395-431)||(36540194-36540230)
[»] chr5 (15 HSPs)
chr5 (33-86)||(31807808-31807861)
chr5 (395-431)||(21067526-21067562)
chr5 (393-436)||(4429942-4429985)
chr5 (395-431)||(972597-972633)
chr5 (395-431)||(1277527-1277563)
chr5 (395-431)||(5203642-5203678)
chr5 (395-431)||(17986057-17986093)
chr5 (395-431)||(23219117-23219153)
chr5 (395-431)||(26310751-26310787)
chr5 (395-431)||(27003966-27004002)
chr5 (396-436)||(29069712-29069752)
chr5 (395-431)||(32273981-32274017)
chr5 (395-431)||(36136865-36136901)
chr5 (392-436)||(37320333-37320377)
chr5 (395-431)||(40596045-40596081)
[»] chr7 (11 HSPs)
chr7 (395-436)||(30552488-30552529)
chr7 (395-431)||(31299998-31300034)
chr7 (395-433)||(2228083-2228121)
chr7 (395-433)||(31807052-31807090)
chr7 (395-433)||(40857345-40857383)
chr7 (395-436)||(38261085-38261126)
chr7 (395-431)||(27339731-27339767)
chr7 (395-431)||(40677107-40677143)
chr7 (395-431)||(43188621-43188657)
chr7 (395-431)||(44327729-44327765)
chr7 (395-431)||(45594889-45594925)
[»] chr4 (17 HSPs)
chr4 (395-436)||(939671-939712)
chr4 (395-436)||(7413176-7413217)
chr4 (395-436)||(7459256-7459297)
chr4 (396-436)||(17518477-17518517)
chr4 (403-433)||(5060423-5060453)
chr4 (395-433)||(31633860-31633898)
chr4 (395-437)||(49652071-49652113)
chr4 (395-436)||(28983816-28983857)
chr4 (403-436)||(35615969-35616002)
chr4 (395-432)||(54065282-54065319)
chr4 (395-431)||(9064791-9064827)
chr4 (395-431)||(16971685-16971721)
chr4 (395-431)||(32233701-32233737)
chr4 (395-431)||(47462039-47462075)
chr4 (389-429)||(48860093-48860133)
chr4 (395-431)||(51425416-51425452)
chr4 (395-431)||(54864485-54864521)
[»] chr1 (7 HSPs)
chr1 (395-436)||(23913692-23913733)
chr1 (395-431)||(22561161-22561197)
chr1 (396-436)||(23809888-23809928)
chr1 (395-431)||(42630988-42631024)
chr1 (395-431)||(49500950-49500986)
chr1 (395-431)||(49948330-49948366)
chr1 (395-431)||(50145135-50145171)
[»] scaffold0014 (1 HSPs)
scaffold0014 (393-431)||(195830-195868)
[»] chr8 (15 HSPs)
chr8 (395-433)||(10286468-10286506)
chr8 (395-436)||(13634930-13634971)
chr8 (395-436)||(13735343-13735384)
chr8 (403-436)||(24430144-24430177)
chr8 (395-436)||(41897908-41897949)
chr8 (395-431)||(3673846-3673882)
chr8 (395-431)||(5917371-5917407)
chr8 (395-431)||(14725391-14725427)
chr8 (395-431)||(15129723-15129759)
chr8 (395-431)||(20150310-20150346)
chr8 (395-431)||(20662611-20662647)
chr8 (396-436)||(24420005-24420045)
chr8 (395-431)||(34642440-34642476)
chr8 (395-431)||(35058414-35058450)
chr8 (393-433)||(44225274-44225314)
[»] scaffold0057 (1 HSPs)
scaffold0057 (395-431)||(64372-64408)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 466
Target Start/End: Complemental strand, 34361131 - 34360706
Alignment:
Q  30 tattatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacataga 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34361131 tattatccctataagatgcagcagaagttggacttttaaaagcctcagtccatgctagcatcttgaacagagctaagtaaacatgcattgtatacataga 34361032  T
Q  130 gataggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcc 229  Q
    ||||||||||| ||||||||||||||||||| |||||||||||       ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34361031 gataggaaaagggaagagttgcaacttctcactttcaaactataaaaaa-ggatccaatgaaatgaagtacttcattcataaaagtaagatgctcaagcc 34360933  T
Q  230 tccatactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaacagct-ataccttgaaatgcatggttaacttaattgttta 328  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||           |||||| ||||| ||||||||||||||||| ||||||||||    
T  34360932 tccatactaaaataataggataaagtctcctccatgttgttcaagcca-----------acagcttataccctgaaatgcatggttaacataattgttta 34360844  T
Q  329 acaggatcagtctttgtatagcggcaattgagaaattgtatgcggcgggagtggtttaagtggattgatagaccaaatgacaaagttattataaactcac 428  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  34360843 acaggatcagtctttgtatagcgggaattgagaaactgtatgcggcgggagtggtttaagtgggttgatagaccaaatgacaaagtcattataaactcac 34360744  T
Q  429 acatataattaaatgtatgtgtcggcgtttaaactacg 466  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34360743 acatataattaaatgtatgtgtcggcgtttaaactacg 34360706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 8374267 - 8374226
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  8374267 gatagacaaaatgacaaagccattataaactcacacatataa 8374226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 11102234 - 11102197
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacata 433  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  11102234 atagacgaaatgacaaagttatcataaactcacacata 11102197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 9727620 - 9727584
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  9727620 gatagacgaaatgacaaagtcattataaactcacaca 9727584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 14465828 - 14465864
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  14465828 gatagacgaaatgacaaagtcattataaactcacaca 14465864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 22721378 - 22721342
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  22721378 gatagacgaaatgacaaagtcattataaactcacaca 22721342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 31642689 - 31642725
Alignment:
Q  393 ttgatagaccaaatgacaaagttattataaactcaca 429  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  31642689 ttgatagacgaaatgacaaagttaatataaactcaca 31642725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 291
Target Start/End: Complemental strand, 5584814 - 5584661
Alignment:
Q  133 aggaaaagagaagagttgcaacttctcagtttcaaactatnnnnnnnggatccgttgaaatgaagtacttcattcataaaagtaagatgctcaagcctcc 232  Q
    |||||| ||||||||||||||||||||| |||||||||||       ||  ||     || ||||| ||||||||| ||||||||||||||||||||| |    
T  5584814 aggaaaggagaagagttgcaacttctcactttcaaactataaaaaaaggtacc-----aaggaagtgcttcattcacaaaagtaagatgctcaagccttc 5584720  T
Q  233 atactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaaca 291  Q
    |||||||||||||||||||||| ||||||||| ||||||   |||||||||||||||||    
T  5584719 atactaaaataataggataaagtctcctccatgttgttcctaccacatgaatttcaaca 5584661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 36685406 - 36685442
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||||||||||||||||||||    
T  36685406 gatagacgaaatgacaaagttattataaactcacaca 36685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 16534940 - 16534982
Alignment:
Q  389 tggattgatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||    
T  16534940 tggatagatagacgaaatgacaaagctattataaactcacaca 16534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 10202295 - 10202254
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  10202295 gatagacgaaatgacaaagccattataaactcacacatataa 10202254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 31819763 - 31819722
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  31819763 gatagacgaaatgacaaagctattataaactcacacacataa 31819722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 7957989 - 7958025
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  7957989 gatagacgaaatgacaaagctattataaactcacaca 7958025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 15488874 - 15488838
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  15488874 gatagacgaaatgacaaagtcattataaactcacaca 15488838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 18055984 - 18055948
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  18055984 gatagacgaaatgacaaagtcattataaactcacaca 18055948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 19967859 - 19967823
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  19967859 gatagacgaaatgacaaagtcattataaactcacaca 19967823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 43461337 - 43461373
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  43461337 gatagacgaaatgacaaagtcattataaactcacaca 43461373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 25291753 - 25291656
Alignment:
Q  33 tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgctagcatcttgaacagaactaagtaaacatgcattgtatacatagag 130  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||| |||||||| ||||||| || ||| | ||||||||||    
T  25291753 tatccctataagatgcagcaaaagttggacttctaaaagccttagttcatgctaacatcttcaacagaacaaagtaaagatacatcgcatacatagag 25291656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 327
Target Start/End: Complemental strand, 25291522 - 25291386
Alignment:
Q  191 aatgaagtacttcattcataaaagtaagatgctcaagcctccatactaaaataataggataaagcctcctccatattgttcaagccacatgaatttcaac 290  Q
    |||||||| ||||||  | ||||||| ||  ||||||||| |||||||||||| ||| || ||| ||||||||| ||||||  || ||||||||||||||    
T  25291522 aatgaagtgcttcatcaacaaaagtaggagactcaagccttcatactaaaatagtagaatcaagtctcctccatgttgttcctgctacatgaatttcaac 25291423  T
Q  291 agctataccttgaaatgcatggttaacttaattgttt 327  Q
    ||||||||| |||||| ||| |||||| |||||||||    
T  25291422 agctataccatgaaatacatagttaacataattgttt 25291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 6419668 - 6419706
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  6419668 gatagacgaaatgacaaagttattataaactcacacata 6419706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 43904498 - 43904539
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  43904498 gatagacgaaatgacaaagttattataaactcacacacataa 43904539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 46316480 - 46316516
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46316480 gatagacgaaatgacaaagttattataaactcacaca 46316516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 23525912 - 23525949
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacata 433  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  23525912 atagacgaaatgacaaagtcattataaactcacacata 23525949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 29216923 - 29216890
Alignment:
Q  403 aaatgacaaagttattataaactcacacatataa 436  Q
    ||||||||||||||||||||||||||||| ||||    
T  29216923 aaatgacaaagttattataaactcacacacataa 29216890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 47570408 - 47570367
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  47570408 gatagacaaaatgacaaagtcattataaactcacacacataa 47570367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 49285633 - 49285592
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  49285633 gatagacgaaatgacaaagtcattataaactcacacacataa 49285592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 11250083 - 11250047
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  11250083 gatagacgaaatgacaaagtcattataaactcacaca 11250047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 20625655 - 20625695
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatata 435  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  20625655 gatagacgaaatgacaaagtcattgtaaactcacacatata 20625695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 35359842 - 35359806
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  35359842 gatagacgaaatgacaaagtcattataaactcacaca 35359806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 35966367 - 35966331
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  35966367 gatagacgaaatgacaaagtcattataaactcacaca 35966331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 36518225 - 36518189
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  36518225 gatagacgaaatgacaaagtcattataaactcacaca 36518189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 36540230 - 36540194
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  36540230 gatagacgaaatgacaaagtcattataaactcacaca 36540194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 31807861 - 31807808
Alignment:
Q  33 tatccctataagatgcagcagaagttggacttctaaaagcctcagtccatgcta 86  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  31807861 tatccctataagatgcagcaaaagttgaacttctaaaagccttagtccatgcta 31807808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 21067562 - 21067526
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21067562 gatagacgaaatgacaaagttattataaactcacaca 21067526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 4429942 - 4429985
Alignment:
Q  393 ttgatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||    
T  4429942 ttgatagacgaaatgataaagttattataaactcacacacataa 4429985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 972597 - 972633
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  972597 gatagacgaaatgacaaagtcattataaactcacaca 972633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 1277563 - 1277527
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  1277563 gatagacgaaatgacaaagtcattataaactcacaca 1277527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 5203678 - 5203642
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5203678 gatagacaaaatgacaaagtcattataaactcacaca 5203642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 17986057 - 17986093
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  17986057 gatagacgaaatgacaaagctattataaactcacaca 17986093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 23219117 - 23219153
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  23219117 gatagacgaaatgacaaagtcattataaactcacaca 23219153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 26310751 - 26310787
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  26310751 gatagacgaaatgacaaagtcattataaactcacaca 26310787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 27003966 - 27004002
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27003966 gatagacgaaatgacaaagtcattataaactcacaca 27004002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 29069752 - 29069712
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacatataa 436  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  29069752 atagacgaaatgacaaagctgttataaactcacacatataa 29069712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 32273981 - 32274017
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  32273981 gatagacgaaatgacaaagtcattataaactcacaca 32274017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 36136865 - 36136901
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  36136865 gatagacgaaatgacaaaattattataaactcacaca 36136901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 37320377 - 37320333
Alignment:
Q  392 attgatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    |||||||||  |||||||||| | |||||||||||||||||||||    
T  37320377 attgatagaagaaatgacaaaataattataaactcacacatataa 37320333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 40596081 - 40596045
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  40596081 gatagacgaaatgacaaagtcattataaactcacaca 40596045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 30552529 - 30552488
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  30552529 gatagacgaaatgacaaagttattataaactcacgcatataa 30552488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 31299998 - 31300034
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||||||||||||||||||||    
T  31299998 gatagacgaaatgacaaagttattataaactcacaca 31300034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 2228083 - 2228121
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  2228083 gatagacgaaatgacaaagtcattataaactcacacata 2228121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 31807052 - 31807090
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  31807052 gatagacgaaatgacaaagtcattataaactcacacata 31807090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 40857345 - 40857383
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  40857345 gatagacgaaatgacaaagttattataaattcacacata 40857383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 38261126 - 38261085
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  38261126 gatagacgaaatgacaaagtcattataaactcacacacataa 38261085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 27339731 - 27339767
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27339731 gatagacgaaatgacaaagtcattataaactcacaca 27339767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 40677143 - 40677107
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  40677143 gatagacgaaatgacaaagctattataaactcacaca 40677107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 43188657 - 43188621
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  43188657 gatagacgaaatgacaaagtcattataaactcacaca 43188621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 44327765 - 44327729
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  44327765 gatagacgaaatgacaaagctattataaactcacaca 44327729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 45594925 - 45594889
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  45594925 gatagacgaaatgacaaagtcattataaactcacaca 45594889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 939712 - 939671
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  939712 gatagacgaaatgacaaagttattataaactcacacacataa 939671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 7413217 - 7413176
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  7413217 gatagacgaaatgacaaagtcattataaactcacacatataa 7413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 7459297 - 7459256
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  7459297 gatagacgaaatgacaaagtcattataaactcacacatataa 7459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 17518477 - 17518517
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacatataa 436  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  17518477 atagacgaaatgacaaagttattataaactcacacacataa 17518517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 433
Target Start/End: Original strand, 5060423 - 5060453
Alignment:
Q  403 aaatgacaaagttattataaactcacacata 433  Q
    |||||||||||||||||||||||||||||||    
T  5060423 aaatgacaaagttattataaactcacacata 5060453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Complemental strand, 31633898 - 31633860
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  31633898 gatagacgaaatgacaaatttattataaactcacacata 31633860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 49652071 - 49652113
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataat 437  Q
    ||||||| ||||||||||  |||||||||||||||||||||||    
T  49652071 gatagacgaaatgacaaaactattataaactcacacatataat 49652113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 28983857 - 28983816
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  28983857 gatagacaaaatgacaaagtcattataaactcacacacataa 28983816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 35616002 - 35615969
Alignment:
Q  403 aaatgacaaagttattataaactcacacatataa 436  Q
    ||||||||||||||||||||||||||||| ||||    
T  35616002 aaatgacaaagttattataaactcacacacataa 35615969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Original strand, 54065282 - 54065319
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacat 432  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  54065282 gatagacgaaatgacaaagttattgtaaactcacacat 54065319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 9064791 - 9064827
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  9064791 gatagacaaaatgacaaagtcattataaactcacaca 9064827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 16971685 - 16971721
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    |||||||  ||||||||||||||||||||||||||||    
T  16971685 gatagacggaatgacaaagttattataaactcacaca 16971721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 32233737 - 32233701
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  32233737 gatagacgaaatgacaaagtcattataaactcacaca 32233701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 47462039 - 47462075
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  47462039 gatagacgaaatgacaaagtcattataaactcacaca 47462075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 48860133 - 48860093
Alignment:
Q  389 tggattgatagaccaaatgacaaagttattataaactcaca 429  Q
    ||||| ||||||| |||||||||||| ||||||||||||||    
T  48860133 tggatagatagacgaaatgacaaagtcattataaactcaca 48860093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 51425452 - 51425416
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  51425452 gatagacgaaatgacaaagtcattataaactcacaca 51425416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 54864521 - 54864485
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  54864521 gatagacgaaatgacaaagtcattataaactcacaca 54864485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 23913733 - 23913692
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  23913733 gatagacaaaatgacaaagttattataaactcacacacataa 23913692  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 22561161 - 22561197
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||||||||||||||||||||    
T  22561161 gatagacaaaatgacaaagttattataaactcacaca 22561197  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 23809888 - 23809928
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacatataa 436  Q
    |||||| |||||||||||| |||||||||||||||| ||||    
T  23809888 atagacaaaatgacaaagtcattataaactcacacacataa 23809928  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 42630988 - 42631024
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  42630988 gatagacgaaatgacaaagtcattataaactcacaca 42631024  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 49500986 - 49500950
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  49500986 gatagacgaaatgacaaagctattataaactcacaca 49500950  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 49948366 - 49948330
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  49948366 gatagacgaaatgacaaagtcattataaactcacaca 49948330  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 50145135 - 50145171
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  50145135 gatagacgaaatgacaaagtcattataaactcacaca 50145171  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 431
Target Start/End: Complemental strand, 195868 - 195830
Alignment:
Q  393 ttgatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  195868 ttgatagacgaaatgacaaagtcattataaactcacaca 195830  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 433
Target Start/End: Original strand, 10286468 - 10286506
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  10286468 gatagacgaaatgacaaagtcattataaactcacacata 10286506  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 13634971 - 13634930
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  13634971 gatagacaaaatgacaaagtcattataaactcacacacataa 13634930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 13735384 - 13735343
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||||| |||||||||||||||| ||||    
T  13735384 gatagacaaaatgacaaagtcattataaactcacacacataa 13735343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 24430177 - 24430144
Alignment:
Q  403 aaatgacaaagttattataaactcacacatataa 436  Q
    |||||| |||||||||||||||||||||||||||    
T  24430177 aaatgataaagttattataaactcacacatataa 24430144  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 41897949 - 41897908
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacacatataa 436  Q
    ||||||| |||||||||| |||||||||||||||||| ||||    
T  41897949 gatagacgaaatgacaaaattattataaactcacacacataa 41897908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 3673846 - 3673882
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  3673846 gatagacgaaatgacaaagtcattataaactcacaca 3673882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 5917407 - 5917371
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5917407 gatagacgaaatgacaaagtcattataaactcacaca 5917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 14725427 - 14725391
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  14725427 gatagacgaaatgacaaagtcattataaactcacaca 14725391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 15129759 - 15129723
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  15129759 gatagacgaaatgacaaagctattataaactcacaca 15129723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 20150346 - 20150310
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  20150346 gatagacgaaatgacaaagctattataaactcacaca 20150310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 20662647 - 20662611
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  20662647 gatagacgaaatgacaaagtcattataaactcacaca 20662611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 24420005 - 24420045
Alignment:
Q  396 atagaccaaatgacaaagttattataaactcacacatataa 436  Q
    |||||| ||||| ||||||||||||||||||||||| ||||    
T  24420005 atagacgaaatggcaaagttattataaactcacacagataa 24420045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 34642440 - 34642476
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  34642440 gatagacgaaatgacaaagtcattataaactcacaca 34642476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 35058450 - 35058414
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  35058450 gatagacgaaatgacaaagtcattataaactcacaca 35058414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 44225314 - 44225274
Alignment:
Q  393 ttgatagaccaaatgacaaagttattataaactcacacata 433  Q
    ||||||||| |||||||||| | ||||||||||||||||||    
T  44225314 ttgatagacgaaatgacaaaatcattataaactcacacata 44225274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 64408 - 64372
Alignment:
Q  395 gatagaccaaatgacaaagttattataaactcacaca 431  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  64408 gatagacgaaatgacaaagtcattataaactcacaca 64372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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