View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_24 (Length: 484)
Name: NF2519_low_24
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Original strand, 12945031 - 12945494
Alignment:
| Q |
4 |
cgtgctgcaaaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtcctatcttttcac |
103 |
Q |
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| T |
12945031 |
cgtgccgccaaaatcttcgccagctccttctgcttatccaccaatggatctccaccgtagccattaacaaagcaccttggcaaccgtccaatcttttcac |
12945130 |
T |
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| Q |
104 |
cgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgctggtaatgg |
203 |
Q |
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| T |
12945131 |
cgtatacgtgatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcgggcaaacataggaaccacatgaggtcacctgctggtaatgg |
12945230 |
T |
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| Q |
204 |
taatatacgatcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggattttaatgggagag |
303 |
Q |
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| T |
12945231 |
taatatacgatcgttgaccaaacgaagctcagattccgttctctggaccccactaaaaaatggatatttcattatgatccctcggattttaatgtgagag |
12945330 |
T |
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| Q |
304 |
agatcaacgtcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaaacatttatcaaagtccacatggtctctga |
403 |
Q |
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| T |
12945331 |
agatcaaggtcgagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaagcatttatcaaagtccacgtggtctctga |
12945430 |
T |
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| Q |
404 |
tccatggatcagattccgttggattttgagcttgggatttgagccagagaagagaatcaactgc |
467 |
Q |
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| T |
12945431 |
tccatggatcagattctgttggattttgagcttgggatttgagccagagaagagaatcaactgc |
12945494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 12937368 - 12937806
Alignment:
| Q |
13 |
aaaatcttcgccagctccttttgcttatccaccaatggatcaccaccgtagccatttacaaaacaccttggcaaccgtcctatcttttcaccgtatacgt |
112 |
Q |
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||||||||| | |||||||||||| |||||||||| ||||| ||||||||||| || ||||| ||||| |||| |||||| ||||| ||||| | || |
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| T |
12937368 |
aaaatcttcactagctccttttgcctatccaccaagggatccccaccgtagccgttaacaaagcacctcggcagccgtccgatcttctcaccatgtatca |
12937467 |
T |
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| Q |
113 |
gatccaaagttgttggattgcaatactcgtggtccctgtctttgccctcaggcaaacacagggaccacatgagatcacctgctggtaatggtaatatacg |
212 |
Q |
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| T |
12937468 |
catccgaaacttttggattacaatacacgtgatcccgatctgtaccctcaggcaaagatagggcccacatgagatcacttgctgataagggtagtatatt |
12937567 |
T |
|
| Q |
213 |
atcgttgaccaaacgaagctcagattccgttctttggaccccactaaaaaatggatatttcattatgatccctcggattttaatgggagagagatcaacg |
312 |
Q |
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|||||| | |||||||||||||||| ||||| || ||||||| |||||| ||| |||||||| | |||| |||| |||| ||||||||||| | | |
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| T |
12937568 |
atcgttaatgaaacgaagctcagattttgttctctgaaccccaccaaaaaacggagcattcattataagcccttggatcttaagaggagagagatcgagg |
12937667 |
T |
|
| Q |
313 |
tcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaaacatttatcaaagtccacatggtctctgatccatggat |
412 |
Q |
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||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||| || |||||||||||||| | ||||||||||||||||| |
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| T |
12937668 |
tcaagagcacgtagacctgcgaagtacgctatgttacctcctgcactacttcccatcaagaagcagttatcaaagtccacgttgtctctgatccatggat |
12937767 |
T |
|
| Q |
413 |
cagattccgttggattttgagcttgggatttgagccaga |
451 |
Q |
| |
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|||| | |||||||||| ||||||| | ||||||||| |
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| T |
12937768 |
cagagacacttggattttgtgcttgggctctgagccaga |
12937806 |
T |
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