View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_26 (Length: 475)
Name: NF2519_low_26
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 26325277 - 26324830
Alignment:
| Q |
19 |
ggttactcatattgaaaaagtttgggtcaatggcatcatcatcattaaatttaaacgttgcatcttcaatacttggattgttttttctgtttgccatggt |
118 |
Q |
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| T |
26325277 |
ggttactcatgttgaaaaaatttgggtcaatggcatcatcatcatcaaatttaaacgttgcaccttcaatacttggattgttttttctgtttgccatggt |
26325178 |
T |
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| Q |
119 |
gggagcaaaacttt-gagaaaaattgtttatggaatgatggtgatggcagtagcggcgctaaataaaagcgtcgctgccgccagaaataaaagttggata |
217 |
Q |
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| T |
26325177 |
ggaagcaaaacttttgagaaaaattgtttatggaatgatggtgatggcagtagcggcgctaaataaaagcgtcgctgccgccagaaatgaaagttggata |
26325078 |
T |
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| Q |
218 |
aaaaccgtttgatgaaacaaaaagagaatgaaagaattggatgaatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattacc |
317 |
Q |
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| T |
26325077 |
aaaaccgtttgatgaaacaaaaagagaatgaaagaatttgatgaatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattacc |
26324978 |
T |
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| Q |
318 |
ggtggaaaattgcatgaattcgtttcagtttgtttattttgaaacgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaa |
417 |
Q |
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| T |
26324977 |
gttggaaaattgcatgaagtcgtttcagtttgtttattttgaaacgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaa |
26324878 |
T |
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| Q |
418 |
atttattatcagttgattaccgttagatactattgtggtcatattgtt |
465 |
Q |
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| T |
26324877 |
atttattatcagttgattaccgttagatactattgtggtcatattgtt |
26324830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 48320850 - 48320906
Alignment:
| Q |
290 |
aaagaggtgcaattgacggttaattaccggtggaaaattgcatgaattcgtttcagtt |
347 |
Q |
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| T |
48320850 |
aaagaggtgcaattggcggttaattaccgtttgaaaa-tgcatgaagtcgtttcagtt |
48320906 |
T |
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