View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_27 (Length: 473)
Name: NF2519_low_27
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 5573934 - 5574128
Alignment:
| Q |
263 |
cttcgaaggattctctaatctataacacgaacaattgataaatgtggtatgggcaaatattagtaagtgggcatatttggcaccgtccatgtttgtgggg |
362 |
Q |
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| T |
5573934 |
cttcgaaggattctctgatctataacacgaccaattgataaatgtggtatgggcaaatattagtaagtgggcatatttggcaccgtccatgtttgtgggg |
5574033 |
T |
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| Q |
363 |
gaacaccactgattttaccatagaacagtgatagtgtttggtgaggaatcaaattcctataaaatatacgcaacattattatgtgactagataaa |
457 |
Q |
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| T |
5574034 |
gaacaccactgattttaccatagaacagtgatagtgtttggtgaggaatcaaattcctataaaatatacgcaacattattatgtgactagataaa |
5574128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 5573736 - 5573902
Alignment:
| Q |
71 |
tatattcatgtccaacacgctttgaatagagggaacttataagaagnnnnnnnntgtaatattatatgtgtaaggaaagtagtttttcattgcctaaaaa |
170 |
Q |
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| T |
5573736 |
tatattcatgtccaacacgctttgaatagagggaacttataagaagaaaaaaa-tgtaatattatatgtgtaaggaaagtagtttttcattgcctaaaaa |
5573834 |
T |
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| Q |
171 |
ataattccct-nnnnnnnnnnntggctaaaaaataatattatcacatgagaagataaaattttatcga |
237 |
Q |
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| T |
5573835 |
atcattccctcaaaaaaaaaaatggctaaaaaataatattatcacatgagaagataaaattttatcga |
5573902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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