View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_28 (Length: 472)
Name: NF2519_low_28
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Original strand, 38292401 - 38292849
Alignment:
| Q |
10 |
attattctcctcaaccatttcatcaatctacaaggtattattattgaaaatgatatcattatagattttcaaattacccaaatcgatgcatgccaaatca |
109 |
Q |
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| T |
38292401 |
attattctcctcaaccatttcatcaatctacatggtattattattgaa--tgatatcattatagattttcaaattacccaaatcgatgcatgccaaatca |
38292498 |
T |
|
| Q |
110 |
accaacaatcctttctaagtttcatgtttctcgcctccccacttcaactttcaaaatgaacaaacaaatt--gaggggtaatgatattcattagggacat |
207 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38292499 |
accaccaatcctttctaagtttcatgttcctcgcctccccacttcaactttcaaaatgaacaaacaaattttgaggggtaatgatattcattaggcacat |
38292598 |
T |
|
| Q |
208 |
tattttggaccacaaaagtttccacgcacccatcacaaaagacacaatttaaatttgccaccaatggaatactatttcttctaacaagatctctcgttgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292599 |
tattttggaccacaaaagtttccacgcacccatcacaaaagacacaatttaaatttgccaccaatggaatactatttcttctaacaagatctctcgttgg |
38292698 |
T |
|
| Q |
308 |
gatacgattatgaaatagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292699 |
gatacgattatgaaatagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaat |
38292798 |
T |
|
| Q |
408 |
aaaacaggttaaccactttttgtcactttcatgtttaaccatgacataaat |
458 |
Q |
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| T |
38292799 |
aaaacaggttaaccactttttgtcactttcatgtttaaccatgacataaat |
38292849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 39611160 - 39610995
Alignment:
| Q |
15 |
tctcctcaaccatttcatcaatctacaaggtattattattgaaaatgatatcattat-agattttcaaattacccaaatcgatgcatgccaaatcaacca |
113 |
Q |
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|||| |||| ||| |||||||||| | |||| ||||||||||||| ||||||| | |||||| ||||| | |||| | |||||| |||||| ||| |
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| T |
39611160 |
tctcttcaatcatatcatcaatctccttggtactattattgaaaattttatcatttttagatttccaaatcattcaaagtgttgcatgtcaaatcgacct |
39611061 |
T |
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| Q |
114 |
acaatcctttctaagtttcatgtttctcgcctccccacttcaactttcaaaatgaacaaacaaatt |
179 |
Q |
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||| | ||| ||||||| | | |||| |||||||||| |||| ||||||||| ||||||||||| |
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| T |
39611060 |
tcaacctttttgaagtttcttatgtctcacctccccactccaacattcaaaatggacaaacaaatt |
39610995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 13854166 - 13854199
Alignment:
| Q |
143 |
cctccccacttcaactttcaaaatgaacaaacaa |
176 |
Q |
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| T |
13854166 |
cctccccactccaactttcaaaatgaacaaacaa |
13854199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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