View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_3 (Length: 798)
Name: NF2519_low_3
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 5433118 - 5433599
Alignment:
| Q |
19 |
catacaccacaacttcataagaattaatgcttttgcatggctctttgatttctccattgactctaataatttccttgatttttacttatttttgcctcat |
118 |
Q |
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| T |
5433118 |
catacaccacaacttcataaggattaatgcttttgcatggctctttgatttctccattgactctaataatttccttgatttttacttatttttgcctcat |
5433217 |
T |
|
| Q |
119 |
cctaaaaaatttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaacaaacaaagctctagtaacagtgaa |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5433218 |
cctaaaatttttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaacaaacaaagctctagtaacagtgaa |
5433317 |
T |
|
| Q |
219 |
aagtagacaaagctctttactttctcacatgctgaccttaacctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaa |
318 |
Q |
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| T |
5433318 |
aagtagacagagctctttactttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaa |
5433417 |
T |
|
| Q |
319 |
acaattcaacaagacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggcgttaaccgataaccaaggaaacataaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
5433418 |
acaattcaacaagacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaaccgataaccaaggaaacatcaa |
5433517 |
T |
|
| Q |
419 |
aaattctgcgaccaagttcgaacacagagacatttttctcaccttctctttaccttttcttatccaagcaatagctgaagac |
500 |
Q |
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| T |
5433518 |
aaattctgcgaccaagttcgaacacaaagacatttttctcaccttctctttaccttttcttatccaagcaatagctgaagac |
5433599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 533 - 787
Target Start/End: Original strand, 5433632 - 5433886
Alignment:
| Q |
533 |
aattcaggtttacaataacaggccggaccacctctatgtacaatcaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtc |
632 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5433632 |
aattcaggtttacaataacagactggaccacctctatgtacaataaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtc |
5433731 |
T |
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| Q |
633 |
atctgggtttccatttcatgtcaagctcggtttcaatcaacttcgtcacctgtcatcgtctttgtcaagctcctatttcgttcagtgtgaaaccttattt |
732 |
Q |
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| T |
5433732 |
atctgggtttccatttcatgtcaagctcggtttcaatcaactttgtcacctgtcatcgtctttgtcaagctcctatttcgttcagtgtgaaaccttattt |
5433831 |
T |
|
| Q |
733 |
tgcttatttcgtttccatttccatactcctggtttgcaagtggtgatgatgatgt |
787 |
Q |
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| T |
5433832 |
tgcttatttcgtttccatttccatactcctggtttgcaagtggtgatgatgatgt |
5433886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 231 - 398
Target Start/End: Complemental strand, 5445952 - 5445785
Alignment:
| Q |
231 |
ctctttactttctcacatgctgaccttaacctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaa |
330 |
Q |
| |
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|||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
5445952 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
5445853 |
T |
|
| Q |
331 |
gacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggcgttaacc |
398 |
Q |
| |
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|||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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| T |
5445852 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
5445785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 231 - 362
Target Start/End: Original strand, 5440718 - 5440853
Alignment:
| Q |
231 |
ctctttactttctcacatgctgaccttaac----ctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattca |
326 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||| |
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| T |
5440718 |
ctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttctataaaataattca |
5440817 |
T |
|
| Q |
327 |
acaagacggttcaccaaattgttatcaaagtcaaca |
362 |
Q |
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|||||| |||||||||||||||||||||| |||||| |
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| T |
5440818 |
acaagaaggttcaccaaattgttatcaaactcaaca |
5440853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 5432453 - 5432541
Alignment:
| Q |
267 |
aaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaagacggttcaccaaattgttatcaaa |
355 |
Q |
| |
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|||||||| ||||||||| |||||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaa |
5432541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 5446084 - 5446025
Alignment:
| Q |
136 |
gtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
195 |
Q |
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||||||||||| | ||| ||||| |||| ||||||| ||||||| ||||||||||||||| |
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| T |
5446084 |
gtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
5446025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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