View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_31 (Length: 463)
Name: NF2519_low_31
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 55 - 446
Target Start/End: Complemental strand, 7804253 - 7803848
Alignment:
| Q |
55 |
tgaagtaaccaatcttatttaacaaaataaagtttggttgttgctgtattcatcgtggatctattttggagtgaataaattatggttgaggaagctaaca |
154 |
Q |
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| T |
7804253 |
tgaagtaaccgatcttatttaacaaaataaagtttggttgttgttgtattcatcgtggatctattttggagtgaataaattatggttgagaaagctaaca |
7804154 |
T |
|
| Q |
155 |
aaaatcttgatgccat-----gacttccctaacacaacagttatgacttgag----caaaaattaaaacaacggttatgataaagagaattaagttgaag |
245 |
Q |
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| T |
7804153 |
aaaatcttgatgccatgagtagacttccctaacacaacagttatgacttgagaaaaaaaaaattaaaaccacggttatgataaagagaattaagttgaag |
7804054 |
T |
|
| Q |
246 |
acaaattttggtgggtgg-----ggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
340 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7804053 |
acaaattttggtgggtggggcatggcatagctcctaattaatcaataccttaattatatccattaacaattcaaatattatttttagttcatcaaatgat |
7803954 |
T |
|
| Q |
341 |
tgaaaatgattggcatgtaactaccagtacaatattaatgggacactaattaggtaccttacgttaagacatgctccctccttttccgtaggatatatgc |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7803953 |
tgaaaatgattggcatgtaactaccagtacaatattaatgggacactaattaggtaccttacgttaagacatgctccctccttttccgtaggatatatgc |
7803854 |
T |
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| Q |
441 |
ttaatc |
446 |
Q |
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|||||| |
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| T |
7803853 |
ttaatc |
7803848 |
T |
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