View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_32 (Length: 461)
Name: NF2519_low_32
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 456
Target Start/End: Original strand, 54479158 - 54479593
Alignment:
| Q |
20 |
cgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttcagtgcaagaaatgcaaagaaaagttccaaatgtcttttgat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54479158 |
cgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttccgtgcaagaaatgcaaagaaaagttccaaatgtcttttcat |
54479257 |
T |
|
| Q |
120 |
ttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgccta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479258 |
ttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatgacagggcgccaaccatttggatgaagccaacattgccta |
54479357 |
T |
|
| Q |
220 |
attgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479358 |
attgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg |
54479457 |
T |
|
| Q |
320 |
ctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54479458 |
ctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactc |
54479557 |
T |
|
| Q |
420 |
ttgcaaacaacttgatcatcccagaccctttgctact |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54479558 |
-tgcaaacaacttgatcatcccagaccctttgatact |
54479593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 195 - 436
Target Start/End: Complemental strand, 25044551 - 25044311
Alignment:
| Q |
195 |
atttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgt |
294 |
Q |
| |
|
|||| |||||| |||| |||||| | |||||||| || || || ||||||||||||||||| ||||||| || ||||| || |||||| ||| ||| |
|
|
| T |
25044551 |
attttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgt |
25044452 |
T |
|
| Q |
295 |
ttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagt |
394 |
Q |
| |
|
||||| | || ||||||||||| || || |||| | |||||| |||||||||| ||||| | | ||| ||||| | |||||||||| ||||| || |
|
|
| T |
25044451 |
ttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggt |
25044352 |
T |
|
| Q |
395 |
tctttatttaacttatcttggactcttgcaaacaacttgatc |
436 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
25044351 |
tctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 410
Target Start/End: Complemental strand, 25040835 - 25040598
Alignment:
| Q |
173 |
catgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaag |
272 |
Q |
| |
|
||||||||| ||||| ||| |||| |||||| |||| |||||| || ||| |||| || |||||| |||| ||||| || ||||| |||||||| ||| |
|
|
| T |
25040835 |
catgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaag |
25040736 |
T |
|
| Q |
273 |
aaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatg |
372 |
Q |
| |
|
||| || |||||| ||| |||||||||| | |||||||| |||| || |||| || | |||| |||||||||| ||||| ||| | ||||| |
|
|
| T |
25040735 |
aaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatc |
25040636 |
T |
|
| Q |
373 |
aatcaggtgccaagaatagagttctttatttaacttat |
410 |
Q |
| |
|
| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
25040635 |
gagctggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 25040971 - 25040886
Alignment:
| Q |
37 |
atctcttgcaaaatagaatagttaatatcaccggagctgttcagtgcaagaaatgcaaagaaaagttccaaatgtcttttgatttg |
122 |
Q |
| |
|
||||||| ||||| ||||| |||| |||||||| | |||||| ||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
25040971 |
atctcttacaaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttg |
25040886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 436
Target Start/End: Complemental strand, 10124400 - 10124187
Alignment:
| Q |
222 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
321 |
Q |
| |
|
|||||||| || |||||| ||||| ||||||| |||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
|
|
| T |
10124400 |
tgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
10124301 |
T |
|
| Q |
322 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctt |
421 |
Q |
| |
|
| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| |||||||||||||||||||||| ||| || |
|
|
| T |
10124300 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttaacttatcttgaact-tt |
10124202 |
T |
|
| Q |
422 |
gcaaacaacttgatc |
436 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10124201 |
gcaaacaacttgatc |
10124187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 438
Target Start/End: Complemental strand, 28649982 - 28649786
Alignment:
| Q |
241 |
aaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagct |
340 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||| || ||| || ||| ||||| |||| || |||||||||||||| || |||| | |||||| | |
|
|
| T |
28649982 |
aaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaatt |
28649883 |
T |
|
| Q |
341 |
gaagtatttctgcaaacacaccaagaatcatgaatcaggtgcc-aagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
438 |
Q |
| |
|
||||||||| ||||| | | ||| ||||| | || |||| || |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
28649882 |
gaagtatttttgcaagtataacaaccatcatagaaca-atgccaaaaaatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 234 - 410
Target Start/End: Original strand, 21393068 - 21393244
Alignment:
| Q |
234 |
aatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgta |
333 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || |||||| || |||||| ||| ||||||| || | ||||||||||| || || |||| || | |
|
|
| T |
21393068 |
aatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttg |
21393167 |
T |
|
| Q |
334 |
aacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttat |
410 |
Q |
| |
|
|||| |||||||||| ||||| ||| ||| ||||| | | |||||||||||||||||||||||||| |||||| |
|
|
| T |
21393168 |
aacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttat |
21393244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 1975327 - 1975173
Alignment:
| Q |
174 |
atgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaaga |
273 |
Q |
| |
|
|||| ||| ||||| ||||| ||||| ||| | |||| ||||||||| ||||| || || |||||| |||| |||||||| || ||||||||| | |||| |
|
|
| T |
1975327 |
atgcgtgatagggcaccaacaatttgaatgcatccaatattgcctaaatgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaaga |
1975228 |
T |
|
| Q |
274 |
aacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcac |
328 |
Q |
| |
|
|| ||||||||| ||| ||||| |||| | |||||||||||||| || ||||| |
|
|
| T |
1975227 |
aaaagagtatcaattggttgtttatgttgatgggacaaatgcttggttgttgcac |
1975173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University