View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_33 (Length: 460)

Name: NF2519_low_33
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_33
NF2519_low_33
[»] chr2 (13 HSPs)
chr2 (11-375)||(31361179-31361543)
chr2 (59-186)||(31387872-31387999)
chr2 (73-208)||(31308047-31308182)
chr2 (67-208)||(31418393-31418535)
chr2 (73-202)||(31324778-31324907)
chr2 (54-166)||(31256585-31256697)
chr2 (60-202)||(31293602-31293746)
chr2 (233-306)||(31293806-31293879)
chr2 (254-348)||(31308263-31308357)
chr2 (242-347)||(31256761-31256866)
chr2 (66-158)||(31375603-31375695)
chr2 (233-298)||(31375807-31375872)
chr2 (392-442)||(31361568-31361618)
[»] chr5 (1 HSPs)
chr5 (233-296)||(36214383-36214446)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 31361179 - 31361543
Alignment:
Q  11 cagagagggcataaaaattatatcaaaatttggtcttctctaaacatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtc 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31361179 cagagaggacataaaaattatatcaaaatttggtcttctctaaacatcataaaagcttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtc 31361278  T
Q  111 atgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaacggtaaatgatgattcaaagccatggaaataaaagtag 210  Q
    || ||||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||      
T  31361279 attggtagttctacagtaaaattgttcgaggaaaattgcctatatattttttaaaaacaaaatggtaaatgttgattcaaagccatggaaataaaagtga 31361378  T
Q  211 acatttaacattcggctttcataataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaa 310  Q
    || || |||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31361379 actttgaacatttggctttcataataaagtgcttacagtattcgaatctgggttagattcccaagctcgggaggaatatttccagacatctgattgccaa 31361478  T
Q  311 ctaactccctatatatttcaagttaaacttaggttctactagaattaatttggattgaacacata 375  Q
    ||||| ||||| |  |||||| | |||||||||||||||||||| | ||||||||||||||||||    
T  31361479 ctaacaccctacacgtttcaaataaaacttaggttctactagaactgatttggattgaacacata 31361543  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 59 - 186
Target Start/End: Original strand, 31387872 - 31387999
Alignment:
Q  59 ataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 158  Q
    |||||| |||||| |||||||||||||||||||| |||||||||| ||||||   |||||||||||||||||||| || |||||||||||||||||||||    
T  31387872 ataaaaatttgaagcttacaaatcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaaattattagaggaaaatcgcctatatata 31387971  T
Q  159 atttaaaaacaaaacggtaaatgatgat 186  Q
    |||  |||||||||| |||||| |||||    
T  31387972 attgtaaaacaaaacagtaaattatgat 31387999  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 31308047 - 31308182
Alignment:
Q  73 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 172  Q
    |||||||||||| ||||||| ||||||| || ||||||   ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  31308047 cttacaaatcttccaatgtagtgagcttagctaatgtcgcaggtagttctccagtaaaattgttagaggaaaatcgcctatatatcattgaaaaacaaaa 31308146  T
Q  173 cggtaaatgatgattcaaagccatggaaataaaagt 208  Q
    | |||  | ||||||| ||| ||||||||| |||||    
T  31308147 cagtatcttatgattctaagtcatggaaatcaaagt 31308182  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 31418535 - 31418393
Alignment:
Q  67 ttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatt-taaa 165  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||   ||||||||||||||||| ||||| || |||| |||||||||||||||| ||||    
T  31418535 ttgaaacttacaactcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaatttgttagatgaaagtcgcctatatataattgtaaa 31418436  T
Q  166 aacaaaacggtaaatgatgattcaaagccatggaaataaaagt 208  Q
    || ||| | |||||| ||||||| |||| ||| |||| |||||    
T  31418435 aaaaaatctgtaaattatgattctaagcaatgaaaatcaaagt 31418393  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 31324778 - 31324907
Alignment:
Q  73 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 172  Q
    ||||||||||| |||||||| ||| ||||| ||||||  | |||||||||| |||||||||||| ||||| | |  ||||||||||||| ||||||||||    
T  31324778 cttacaaatctcgcaatgtagtgaccttggacaatgttgtaggtagttctctagtaaaattgttagaggacattttcctatatataattgaaaaacaaaa 31324877  T
Q  173 cggtaaatgatgattcaaagccatggaaat 202  Q
    | |||||| ||||||| ||||||| |||||    
T  31324878 cagtaaattatgattctaagccatagaaat 31324907  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 31256585 - 31256697
Alignment:
Q  54 acatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctat 153  Q
    ||||||||||| |||||| |||||||||||||||||||  ||||||| |||||||||   ||||||||||| ||||||||||| ||||||| |  |||||    
T  31256585 acatcataaaaatttgaagcttacaaatcttgcaatgtggtgagctttgccaatgtcgcaggtagttctccggtaaaattgttagaggaaagtttcctat 31256684  T
Q  154 atataatttaaaa 166  Q
    |||||||| ||||    
T  31256685 atataattgaaaa 31256697  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 31293602 - 31293746
Alignment:
Q  60 taaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatat--at 157  Q
    ||||| |||||| ||||||||||  |||||||| ||||||| ||||||||    |||||||||||||||||||| || ||||| | |  |||||||  |     
T  31293602 taaaactttgaagcttacaaatcgcgcaatgtagtgagctttgccaatgtggcaggtagttctccagtaaaattattagaggacattttcctatatacac 31293701  T
Q  158 aatttaaaaacaaaacggtaaatgatgattcaaagccatggaaat 202  Q
    |||| ||||||||||| | |||| ||||||| ||||||| |||||    
T  31293702 aattgaaaaacaaaacagcaaattatgattctaagccatagaaat 31293746  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 31293806 - 31293879
Alignment:
Q  233 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattg 306  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||||  |||||||  |||||||||| ||||||    
T  31293806 aataaagtacttacagtgttcgaatctgggttagatttccaagctcacgaggaatgattccagacatttgattg 31293879  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 348
Target Start/End: Original strand, 31308263 - 31308357
Alignment:
Q  254 gaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaacttaggttcta 348  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||| |||||  |   |||||| ||||  ||||||||||||| ||| ||||||    
T  31308263 gaatctgggttagatttccaagctcaggaggaatatttccaaacatttgattttccgataactcactatccatttcaagttaaagttaagttcta 31308357  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 31256761 - 31256866
Alignment:
Q  242 cttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaactta 341  Q
    |||||| |||||| |||||| ||||||||||||||||  ||||||||||| | ||||| |||||| |   ||| |||||||  ||||||||||||| |||    
T  31256761 cttacagtgttcgtatctggcttagattcccaagctcatgaggaatattttccgacatttgattggccgttaaatccctattcatttcaagttaaaatta 31256860  T
Q  342 ggttct 347  Q
     |||||    
T  31256861 agttct 31256866  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 31375603 - 31375695
Alignment:
Q  66 tttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 158  Q
    |||||| |||||||||||  ||||||| | ||||| |||||||||   |||||||| |||||||||||||| || |||| | |||||||||||    
T  31375603 tttgaagcttacaaatctatcaatgtagtcagctttgccaatgtcgcaggtagttcgccagtaaaattgttagatgaaatttgcctatatata 31375695  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 31375807 - 31375872
Alignment:
Q  233 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagaca 298  Q
    |||||||| |||||| | ||||||| ||| |||||| ||||||||| ||||||| |||||||||||    
T  31375807 aataaagttcttacagtcttcgaatttggcttagatacccaagctcaggaggaagatttccagaca 31375872  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 31361568 - 31361618
Alignment:
Q  392 gttgctaagtgggataatgagaaactcacaaaaattgaagagttgatatgt 442  Q
    ||||| ||||| ||||||||||||||||||||| ||| ||||| |||||||    
T  31361568 gttgccaagtgagataatgagaaactcacaaaatttggagagtagatatgt 31361618  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 36214383 - 36214446
Alignment:
Q  233 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccaga 296  Q
    ||||||||||||||| | || |||| |||||||||||||||| ||| ||||||| |||||||||    
T  36214383 aataaagtgcttacactctttgaatttgggttagattcccaaactcaggaggaagatttccaga 36214446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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