View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_35 (Length: 454)
Name: NF2519_low_35
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 66 - 435
Target Start/End: Original strand, 28252632 - 28253001
Alignment:
| Q |
66 |
tgaacataattactagatcaaattcaacaactatgcttagttgttaattgagatttaagctaatttcatatttgatcaagatacaaaacgcattaagcac |
165 |
Q |
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|||||| ||||||||||| |||||||| | ||||| |||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
28252632 |
tgaacaaaattactagattaaattcaatagctatgactagtagtcaattgagatttaagttcatttcatatttgatcaagatacaaaacgcattaagcac |
28252731 |
T |
|
| Q |
166 |
aagtaattctaaataaatactagaattgtaaagtttatacaaccacatagttcaaacagcttgataccagttcgtctaagacctaataaatgaaaacata |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28252732 |
aagtaattctaaataaatactagaattgtaaagtttatacaaccacatagttcaaatagcttgatataagttcgtctaagacctaataaatgaaaacata |
28252831 |
T |
|
| Q |
266 |
gatactcttggctaaagcactattatttggaatttttgcattccgccttcttactcctttttcgtttttgcgtttaatgcatcaaaagctcctaaccgat |
365 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28252832 |
gatactcttcgctaaagcactattatttggaattcttgcattccgccttcgcactcctttttcgtttttgcgtttaatgcatcaaaagctcctaaccgat |
28252931 |
T |
|
| Q |
366 |
gaaaattttaagattcgagattgtatgatggtttcaatttgtgtgttgtgttattagatggatgaaactt |
435 |
Q |
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| T |
28252932 |
gaaaattttaagattcgagattgtatgatggtttcaatttgtgtgttgtgttattagatggatgaaactt |
28253001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 21599462 - 21599271
Alignment:
| Q |
1 |
ttatggaacattaatttttaagtcacaacctaacaatcctctatctctaaagtgaccccattgagtgaacataattactagatcaaattcaacaactatg |
100 |
Q |
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| T |
21599462 |
ttatggaacattaatttttaagtcaaagcctaacaatcctctatctctaaagtgaccccattgaatgaacataattactagatcaaattcaacaactatg |
21599363 |
T |
|
| Q |
101 |
cttagttgttaattgagatttaagctaatttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaataaatactagaatt |
192 |
Q |
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| T |
21599362 |
cttagttgttaattgagatttaagctaatttcatatttgatcaagatacaaaaagcattaaacacaagtaattttgaataacaactagaatt |
21599271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 3297151 - 3296856
Alignment:
| Q |
6 |
gaacattaatttttaagtcacaacctaacaatcctctatctctaaagtgaccccattgagtgaacataattactagatcaaattcaacaactatgcttag |
105 |
Q |
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| T |
3297151 |
gaacgttaatttataagtcatgacctaacaatcttctatctctaaagttaccagttaaattgaacataattactaggtcaaattcaacagttacgactag |
3297052 |
T |
|
| Q |
106 |
ttgttaattgagatttaagctaatttcatatttgatcaagatacaaaacgcat---taagcacaagtaattctaaataaatactagaattgtaa------ |
196 |
Q |
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| T |
3297051 |
tagtcaattgagatttaagtccatttcataattgatcaagttacaaaaagcattaataagcacaagtaattctgaataacaactagaattgtaattgtat |
3296952 |
T |
|
| Q |
197 |
-------agtttatacaaccacatagttcaaacagcttgataccagttcgtctaagacctaataaatgaaaacatagatactcttggctaaagcac |
285 |
Q |
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| T |
3296951 |
tgagtagagtttatacaatcacatggttcaaagagtttgatacaagctcatctaagacctaatcaatagaaaattagatactcatggctaaagcac |
3296856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 26156949 - 26157120
Alignment:
| Q |
6 |
gaacattaatttttaagtcacaacctaacaatcctctatctctaaagtgaccccattgagtgaacataattactagatcaaattcaacaactatgcttag |
105 |
Q |
| |
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|||| ||||||||||| | | |||||||||||||||| || ||||||||||| | | | |||| ||||| |||||| ||||||||||||||| ||| |
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| T |
26156949 |
gaacgttaatttttaaatta-aacctaacaatcctctgcctataaagtgacccgttaggttaaacaaaattattagatcgaattcaacaactatgactag |
26157047 |
T |
|
| Q |
106 |
ttgttaattgagatttaagctaatttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaa |
178 |
Q |
| |
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| || |||||| |||||| | |||| |||| ||||||||||| |||| |||||| | ||| |||||||||| |
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| T |
26157048 |
tagtcaattgatatttaaattcatttaatatgtgatcaagatataaaaagcattacacgcaaataattctaaa |
26157120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 18547329 - 18547264
Alignment:
| Q |
128 |
atttcatatttgatcaagatacaaaacgcattaagcacaagtaattctaaataaatactagaattg |
193 |
Q |
| |
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|||| |||| |||||||||||||||| ||||||| ||||||| || | |||||||||||||||| |
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| T |
18547329 |
attttatatgtgatcaagatacaaaaagcattaaacacaagttatattgtataaatactagaattg |
18547264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 38070625 - 38070573
Alignment:
| Q |
6 |
gaacattaatttttaagtcacaacctaacaatcctctatctctaaagtgaccc |
58 |
Q |
| |
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|||| |||||||||| |||| |||||||||||| |||||| ||||| |||||| |
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| T |
38070625 |
gaacgttaatttttatgtcataacctaacaatcatctatccctaaattgaccc |
38070573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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