View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_36 (Length: 453)
Name: NF2519_low_36
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_36 |
 | |
|
| [»] scaffold0400 (3 HSPs) |
| | |
|
| [»] scaffold0365 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0400 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 5617 - 5188
Alignment:
| Q |
11 |
cagagaggttgtttcctgacaattggattgtggtaagggaattgagcttaccaacttcattgggaatgctaccagagagtctattaagtgataaatcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5617 |
cagagaggttgtttcctgacaattggattgtggtaagggaattgagctttccaacttcactgggaatgttaccagagagtctattaagtgataaatcaag |
5518 |
T |
|
| Q |
111 |
agtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtgatgagaaa |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5517 |
agtttccagatttgacatcaccccaatatggtgaggaacaactccgtaaaaggaattgttttttaaaactaagatgcggatttttggaagtgatgagaaa |
5418 |
T |
|
| Q |
211 |
ttgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcccaa---ctac |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5417 |
ttgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaacatgtgattccttcccaactactac |
5318 |
T |
|
| Q |
308 |
aaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttggatttt |
407 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
5317 |
aaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagaacatctacttcgctgccttggatttt |
5218 |
T |
|
| Q |
408 |
tgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5217 |
tgttgtggcatgaggtgatgtggctattac |
5188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 69 - 385
Target Start/End: Complemental strand, 11055 - 10739
Alignment:
| Q |
69 |
attgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattg |
168 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||| ||||| || |||||||| || ||||||||||| |||| || ||| |
|
|
| T |
11055 |
attgggaacgctaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatgatgtggaacaactccaaagaatgagttg |
10956 |
T |
|
| Q |
169 |
ttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgg |
268 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| | |
|
|
| T |
10955 |
tttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatag |
10856 |
T |
|
| Q |
269 |
attttgagtcatcacaacatgtgattccttcccaactacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgcttt |
368 |
Q |
| |
|
||||||| | || |||||||||||| ||||| | ||||| || |||||||||||||||||||||||| | | || |||||||||||||||||||| |
|
|
| T |
10855 |
attttgacttgccatcacatgtgattcccacccaattgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgcttt |
10756 |
T |
|
| Q |
369 |
ccacttcaatagagcat |
385 |
Q |
| |
|
||| ||||||| ||||| |
|
|
| T |
10755 |
ccatttcaataaagcat |
10739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 11471 - 11400
Alignment:
| Q |
13 |
gagaggttgtttcctgacaattggattgtggtaagggaattgagcttaccaacttcattgggaatgctacca |
84 |
Q |
| |
|
||||||||||| || |||| |||||||||| |||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
11471 |
gagaggttgttgtctaacaactggattgtggaaagggaataaagttttccaacttcattcggaatgctacca |
11400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 6261 - 5832
Alignment:
| Q |
11 |
cagagaggttgtttcctgacaattggattgtggtaagggaattgagcttaccaacttcattgggaatgctaccagagagtctattaagtgataaatcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6261 |
cagagaggttgtttcctgacaattggattgtggtaagggaattgagctttccaacttcactgggaatgttaccagagagtctattaagtgataaatcaag |
6162 |
T |
|
| Q |
111 |
agtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtgatgagaaa |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6161 |
agtttccagatttgacatcaccccaatatggtgaggaacaactccgtaaaaggaattgttttttaaaactaagatgcggatttttggaagtgatgagaaa |
6062 |
T |
|
| Q |
211 |
ttgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcccaa---ctac |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6061 |
ttgagactttgaagcataccttttaggccaatattggtgagatttaacttgcagatagattttgagtcatcacaacatgtgattccttcccaactactac |
5962 |
T |
|
| Q |
308 |
aaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttggatttt |
407 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
5961 |
aaggatcgttaccgatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagaacatctacttcgctgccttggatttt |
5862 |
T |
|
| Q |
408 |
tgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5861 |
tgttgtggcatgaggtgatgtggctattac |
5832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 69 - 385
Target Start/End: Complemental strand, 11698 - 11382
Alignment:
| Q |
69 |
attgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattg |
168 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||| ||||| || |||||||| || ||||||||||| |||| || ||| |
|
|
| T |
11698 |
attgggaacgctaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatgatgtggaacaactccaaagaatgagttg |
11599 |
T |
|
| Q |
169 |
ttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgg |
268 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| | |
|
|
| T |
11598 |
tttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatag |
11499 |
T |
|
| Q |
269 |
attttgagtcatcacaacatgtgattccttcccaactacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgcttt |
368 |
Q |
| |
|
||||||| | || |||||||||||| ||||| | ||||| || |||||||||||||||||||||||| | | || |||||||||||||||||||| |
|
|
| T |
11498 |
attttgacttgccatcacatgtgattcccacccaattgcaaggcttattaccaatccatgaagagagcaatgacttgctttggttgtcaaagcttgcttt |
11399 |
T |
|
| Q |
369 |
ccacttcaatagagcat |
385 |
Q |
| |
|
||| ||||||| ||||| |
|
|
| T |
11398 |
ccatttcaataaagcat |
11382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 12114 - 12043
Alignment:
| Q |
13 |
gagaggttgtttcctgacaattggattgtggtaagggaattgagcttaccaacttcattgggaatgctacca |
84 |
Q |
| |
|
||||||||||| || |||| |||||||||| |||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
12114 |
gagaggttgttgtctaacaactggattgtggaaagggaataaagttttccaacttcattcggaatgctacca |
12043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 70 - 437
Target Start/End: Complemental strand, 14502257 - 14501890
Alignment:
| Q |
70 |
ttgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgt |
169 |
Q |
| |
|
||||||||| |||||||||| |||| ||||| ||||||||||| || || ||||||||||||||||||||||| |||||| |||| ||||| || |||| |
|
|
| T |
14502257 |
ttgggaatgttaccagagagattatttagtgacaaatcaagagtgtctaggtttgacatcactccaatatggtgtggaacagctccatagaatgagttgt |
14502158 |
T |
|
| Q |
170 |
tttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgga |
269 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||| |||| |||||| |
|
|
| T |
14502157 |
tttttaaaactaaggtgcggatttttggaagtgatgataaattgagactttgaagcgtaccttttagtccaatatcagtgagatttaccttgttgatgga |
14502058 |
T |
|
| Q |
270 |
ttttgagtcatcacaacatgtgattccttcccaactacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttc |
369 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| | |||||||| |||||||||| |
|
|
| T |
14502057 |
ttttgaatcattatcacatgtgattccttcccaactacaaggattattaccattccatgaagaaagcaatgccctactgttgttgtcaaggcttgctttc |
14501958 |
T |
|
| Q |
370 |
cacttcaatagagcatctacttcactgccttggatttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||| |||||||| | || || ||||||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
14501957 |
cacttcaacagagcatcagcctcgctaccttggattattgttgcagcatgaggtgatgttgcaattac |
14501890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 69 - 437
Target Start/End: Complemental strand, 15035584 - 15035213
Alignment:
| Q |
69 |
attgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattg |
168 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||| |||||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||||||||| ||| |
|
|
| T |
15035584 |
attgggaatggtaccagagagttcatttagtgacaaatcaagagtttctagattggacattacaccaatatggtgtggaactacaccgtagaaggagttg |
15035485 |
T |
|
| Q |
169 |
ttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgg |
268 |
Q |
| |
|
| |||||||||| | | | ||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
15035484 |
ctgcttaaaactaaacttttcaatttcggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttaccttgttgatgg |
15035385 |
T |
|
| Q |
269 |
attttgagtcatcacaacatgtgattccttcccaactac---aaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgc |
365 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
15035384 |
attttgaatcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagcaatgccctgttgtggttgtcaaggcttgc |
15035285 |
T |
|
| Q |
366 |
tttccacttcaatagagcatctacttcactgccttggatttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15035284 |
tttccacttcaacagagcatctgcctcactgcctttgatttttgttgcagcatgaggtgatgtggcaattac |
15035213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 103 - 437
Target Start/End: Complemental strand, 15023791 - 15023457
Alignment:
| Q |
103 |
aaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtg |
202 |
Q |
| |
|
|||| |||||||| |||| | |||||| ||||||||||||| |||| |||||| || ||||| |||||| ||||||||||| |||| ||||| ||||||| |
|
|
| T |
15023791 |
aaattaagagttttcagactagacatctctccaatatggtgtggaataactccatacaaggagttgtttgttaaaactaaggtgtgtattttcggaagtg |
15023692 |
T |
|
| Q |
203 |
atgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttccca |
302 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||||| |
|
|
| T |
15023691 |
atgagaaattgagactttgaagagtaccgtttaatccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca |
15023592 |
T |
|
| Q |
303 |
actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttgg |
402 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| | || || |||||| |
|
|
| T |
15023591 |
accacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgttttccacttcaatagagcatcagcctcgctaccttgg |
15023492 |
T |
|
| Q |
403 |
atttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| |
|
|
| T |
15023491 |
atttttgttgcagcatgaggtgatgttgcaattac |
15023457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 103 - 437
Target Start/End: Complemental strand, 15009674 - 15009340
Alignment:
| Q |
103 |
aaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtg |
202 |
Q |
| |
|
|||| |||||||| ||| | |||||| ||||||| ||||| |||||||||||||| ||| | |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
15009674 |
aaattaagagttttgagactagacatctctccaatttggtgtggaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtg |
15009575 |
T |
|
| Q |
203 |
atgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttccca |
302 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||||| |
|
|
| T |
15009574 |
atgagaagttgagactctgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca |
15009475 |
T |
|
| Q |
303 |
actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttgg |
402 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| | || || |||||| |
|
|
| T |
15009474 |
accacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctaccttgg |
15009375 |
T |
|
| Q |
403 |
atttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| |
|
|
| T |
15009374 |
atttttgttgcagcatgaggtgatgttgcaattac |
15009340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 103 - 437
Target Start/End: Complemental strand, 15030772 - 15030438
Alignment:
| Q |
103 |
aaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtg |
202 |
Q |
| |
|
|||| |||||||| ||| | |||||| ||||||| ||||| |||||||||||||| ||| | |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
15030772 |
aaattaagagttttgagactagacatctctccaatttggtgtggaacaactccgtacaagaagttgtttgttaaaactaaagtgtggatttttggaagtg |
15030673 |
T |
|
| Q |
203 |
atgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttccca |
302 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |||| |||||| || || |||| | ||| |||||||||||||| |
|
|
| T |
15030672 |
atgagaagttgagactctgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggacttcgattcataatcacacgtgattccttccca |
15030573 |
T |
|
| Q |
303 |
actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttgg |
402 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| | || || |||||| |
|
|
| T |
15030572 |
accacaaggattattaccaatccatgaagagagaaatgccctgctatggttgtcaaggcttgatttccacttcaatagagcatcagcctcgctaccttgg |
15030473 |
T |
|
| Q |
403 |
atttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||| |
|
|
| T |
15030472 |
atttttgttgcagcatgaggtgatgttgcaattac |
15030438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 103 - 430
Target Start/End: Complemental strand, 15001071 - 15000741
Alignment:
| Q |
103 |
aaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtg |
202 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||||||||||| ||||||||||||| ||| | |||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
15001071 |
aaatcaagagtttttagactagacatctctccaatatggtgtggaacaactccgtgcaagaagttgtttgttaaaactaaggtgtggatttttgtaagtg |
15000972 |
T |
|
| Q |
203 |
atgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttccca |
302 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||||||||||| | || | ||| |||||||||||||| |
|
|
| T |
15000971 |
atgagaaattgagagtttgaagcgtaccttttagtccaatattggtgagatttatcatgttgatggattttgattgataatcacacgtgattccttccca |
15000872 |
T |
|
| Q |
303 |
a---ctacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgcct |
399 |
Q |
| |
|
| ||||||||||| | |||||||||||||||||||||||||| || |||||||||| |||||| ||||| ||||| |||||||| || ||||| ||| |
|
|
| T |
15000871 |
actactacaaggattattgccaatccatgaagagagcaatgccctgctgtggttgtcaaggcttgccttccatttcaacagagcatcaacctcactacct |
15000772 |
T |
|
| Q |
400 |
tggatttttgttgtggcatgaggtgatgtgg |
430 |
Q |
| |
|
||| ||||| ||| |||||||||||||||| |
|
|
| T |
15000771 |
tggttttttcttgcagcatgaggtgatgtgg |
15000741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 103 - 426
Target Start/End: Complemental strand, 15016077 - 15015751
Alignment:
| Q |
103 |
aaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtg |
202 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||||||||||| ||||||| ||||| | | | |||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
15016077 |
aaatcaagagtttttagactagacatctctccaatatggtgtggaacaatgccgtacaggaagttgtttcttaaaactaaggtacggatttttggaagtg |
15015978 |
T |
|
| Q |
203 |
atgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttccca |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
15015977 |
atgagaaattgagactttgaagtgtaccttttagtccaatattggtgagatttaccttgttgatggattttgaatcatcatcacatgtgattccttccca |
15015878 |
T |
|
| Q |
303 |
---actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgcct |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| | || ||||||||||||||| ||||||||||||| |||| ||| | |||| |||| |
|
|
| T |
15015877 |
gctactacaaggattattaccaatccatgaagagagtaatgctttgctttggttgtcaaagctttctttccacttcaacagagactctgcctcacggcct |
15015778 |
T |
|
| Q |
400 |
tggatttttgttgtggcatgaggtgat |
426 |
Q |
| |
|
| ||||||||||| |||||||||||| |
|
|
| T |
15015777 |
ttgatttttgttgcagcatgaggtgat |
15015751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 69 - 386
Target Start/End: Original strand, 14534509 - 14534829
Alignment:
| Q |
69 |
attgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattg |
168 |
Q |
| |
|
|||||||||| |||||||||| | |||| ||| ||||||||||||| ||| | |||||| ||||||||||||| |||||||||||||| ||| | ||| |
|
|
| T |
14534509 |
attgggaatggtaccagagagattgttaactgacaaatcaagagtttttagactagacatctctccaatatggtgtggaacaactccgtacaagaagttg |
14534608 |
T |
|
| Q |
169 |
ttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgg |
268 |
Q |
| |
|
||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| ||||| |
|
|
| T |
14534609 |
tttgttaaaactaaagtgtggatttttgtaagtgatgagaaattgagactttgaagcgtaccttttagtccaatatcagtgagatttaccttgttgatgg |
14534708 |
T |
|
| Q |
269 |
attttgagtcatcacaacatgtgattccttccca---actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgc |
365 |
Q |
| |
|
| ||||| | || | ||| |||||||||||||| |||||||||||| | |||||||||||||||||||| || | ||||||||||||| |||||| |
|
|
| T |
14534709 |
actttgatttataatcacacgtgattccttcccaactactacaaggattattgccaatccatgaagagagcaaagcattgctatggttgtcaaggcttgc |
14534808 |
T |
|
| Q |
366 |
tttccacttcaatagagcatc |
386 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
14534809 |
tttccacttcaacagagcatc |
14534829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 145 - 431
Target Start/End: Complemental strand, 14466078 - 14465789
Alignment:
| Q |
145 |
ggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatat |
244 |
Q |
| |
|
|||| |||||| |||||||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
14466078 |
ggaataactccatagaaggagttgtttctcaaaactaattcttggatttttggaagtgatgagaaattgagagtttgaagcgtaccttttagtccaatat |
14465979 |
T |
|
| Q |
245 |
tggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattccttcccaa---ctacaaggattgctaccaatccatgaagagagcaatgc |
341 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| | || |
|
|
| T |
14465978 |
tggtgagatttaccttgtagattgattttgattcatcatcacatgtgattccttcccaactactacaaggattattaccaatccatgaagagagtagtgt |
14465879 |
T |
|
| Q |
342 |
cctactatggttgtcaaagcttgctttccacttcaatagagcatctacttcactgccttggatttttgttgtggcatgaggtgatgtggc |
431 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||| | ||||| ||||||||| |
|
|
| T |
14465878 |
cttgctttggttgtcaaagcttgctttccacttcaacagagcatctgtctcactgcttttgatttttgttgcagtatgagatgatgtggc |
14465789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 69 - 437
Target Start/End: Original strand, 14524532 - 14524900
Alignment:
| Q |
69 |
attgggaatgctaccagagagtctattaagtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattg |
168 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||| ||||||||||| || ||||| |||| | ||||||||||| ||||||||||| ||||| || ||| |
|
|
| T |
14524532 |
attgtgaatgctaccagagagtttatttagtgacaaatcaagagtgtctagattgcacattagaccaatatggtgtggaacaactccatagaatgagttg |
14524631 |
T |
|
| Q |
169 |
ttttttaaaactaagatgtggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatgg |
268 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||| | | |||| || |||| |||| | |
|
|
| T |
14524632 |
tttcttaaaactaagctatggatttttggaagtgatgagatattgagattttgaagtgtaccttttagtccaatacttgcaagatgtatcttgtagatag |
14524731 |
T |
|
| Q |
269 |
attttgagtcatcacaacatgtgattccttcccaactacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgcttt |
368 |
Q |
| |
|
||||||| | || |||||||||||| ||||| | ||||| || |||||||||||||||||||||| | | | || |||||||||||||||||||| |
|
|
| T |
14524732 |
attttgacttgccatcacatgtgattcccacccaattgcaaggcttattaccaatccatgaagagagcaaagacttgctttggttgtcaaagcttgcttt |
14524831 |
T |
|
| Q |
369 |
ccacttcaatagagcatctacttcactgccttggatttttgttgtggcatgaggtgatgtggctattac |
437 |
Q |
| |
|
||| ||||||| ||||| | | || |||| ||| || |||| || ||| ||||||||||||| ||||| |
|
|
| T |
14524832 |
ccatttcaataaagcatttgcctcgctgctttgcatatttgctgaagcaagaggtgatgtggccattac |
14524900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 409
Target Start/End: Complemental strand, 14481032 - 14480706
Alignment:
| Q |
98 |
gtgataaatcaagagtttccagatttgacatcactccaatatggtgaggaacaactccgtagaaggaattgttttttaaaactaagatgtggatttttgg |
197 |
Q |
| |
|
|||| ||||||||||| | |||||| ||||| || |||||||||| |||| |||||| |||||| | |||||| | |||||||| | ||||||||||| |
|
|
| T |
14481032 |
gtgaaaaatcaagagtgttcagattggacattacaccaatatggtatggaataactccatagaagaagttgtttctcaaaactaatttttggatttttgg |
14480933 |
T |
|
| Q |
198 |
aagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagatttaacttgcagatggattttgagtcatcacaacatgtgattcct |
297 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| | ||||||||| || |||| || |||||||||| || | |||| |||||||| |
|
|
| T |
14480932 |
aagtgatgagaaattgagactttgaagtgtaccttttagttcaaaactggtgagatctatcttgttaatagattttgagttattatcacatatgattcct |
14480833 |
T |
|
| Q |
298 |
tccca---------------actacaaggattgctaccaatccatgaagagagcaatgccctactatggttgtcaaagcttgctttccacttcaatagag |
382 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| | | || | || || ||||||||||||||||||||||| || |||| |
|
|
| T |
14480832 |
tcccaacttagtccaatactactacaaggattattaccaatccatgaagagagtatttccttgctttgtttgtcaaagcttgctttccactttaaaagag |
14480733 |
T |
|
| Q |
383 |
catctacttcactgccttggatttttg |
409 |
Q |
| |
|
||||| | || |||||||| |||||| |
|
|
| T |
14480732 |
catctgcctcgttgccttggttttttg |
14480706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 15035984 - 15035929
Alignment:
| Q |
29 |
acaattggattgtggtaagggaattgagcttaccaacttcattgggaatgctacca |
84 |
Q |
| |
|
||||||||||||||| |||||||| |||||| || | |||||| |||||||||||| |
|
|
| T |
15035984 |
acaattggattgtggaaagggaatagagctttcctaattcatttggaatgctacca |
15035929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 16023155 - 16023086
Alignment:
| Q |
187 |
tggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagattta |
256 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| |||| ||||||| || || ||||| |||||||||| |
|
|
| T |
16023155 |
tggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagattta |
16023086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 16101247 - 16101178
Alignment:
| Q |
187 |
tggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagattta |
256 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| |||| ||||||| || || ||||| |||||||||| |
|
|
| T |
16101247 |
tggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagattta |
16101178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 16170925 - 16170856
Alignment:
| Q |
187 |
tggatttttggaagtgatgagaaattgagactttgaagcataccttttaagccaatattggtgagattta |
256 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||| |||| ||||||| || || ||||| |||||||||| |
|
|
| T |
16170925 |
tggatatttggaagtgatgagaagttaagactttcaagcgtacctttcaatcccatatttgtgagattta |
16170856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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