View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_38 (Length: 437)

Name: NF2519_low_38
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_38
NF2519_low_38
[»] chr4 (4 HSPs)
chr4 (232-372)||(6658232-6658372)
chr4 (232-372)||(12862165-12862305)
chr4 (119-166)||(6658119-6658166)
chr4 (119-166)||(12862052-12862099)
[»] chr6 (1 HSPs)
chr6 (119-166)||(35223784-35223831)
[»] chr3 (2 HSPs)
chr3 (129-166)||(37086061-37086098)
chr3 (291-372)||(37085850-37085933)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 232 - 372
Target Start/End: Original strand, 6658232 - 6658372
Alignment:
Q  232 ttcgacatggatcggttgtgttgttgtgtttgaannnnnnnaatgaaattttagatttttgttgttaatgaaaggagggttatgatttaatttgatgttg 331  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6658232 ttcgacatggatcggttgtgttgttgtgtttgaatttttttaatgaaattttagatttgtgttgttaatgaaaggagggttatgatttaatttgatgttg 6658331  T
Q  332 acaacattccttccccctttagatttgatgttgttgttaat 372  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  6658332 acaacattccttccccatttagatttgatgttgttgttaat 6658372  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 232 - 372
Target Start/End: Original strand, 12862165 - 12862305
Alignment:
Q  232 ttcgacatggatcggttgtgttgttgtgtttgaannnnnnnaatgaaattttagatttttgttgttaatgaaaggagggttatgatttaatttgatgttg 331  Q
    ||||||||||||||| |||||||| |||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12862165 ttcgacatggatcggctgtgttgtcgtgtttgaatttttttaatgaaattttagatttgtgttgttaatgaaaggagggttatgatttaatttgatgttg 12862264  T
Q  332 acaacattccttccccctttagatttgatgttgttgttaat 372  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  12862265 acaacattccttccccctttaaatttgatgttgttgttaat 12862305  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 6658119 - 6658166
Alignment:
Q  119 atcttcttcttacaatatgggttcttaatccttttgttctacaaatca 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6658119 atcttcttcttacaatatgggttcttaatccttttgttctacaaatca 6658166  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 12862052 - 12862099
Alignment:
Q  119 atcttcttcttacaatatgggttcttaatccttttgttctacaaatca 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  12862052 atcttcttcttacaatatgggttcttaatcattttgttctacaaatca 12862099  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 35223784 - 35223831
Alignment:
Q  119 atcttcttcttacaatatgggttcttaatccttttgttctacaaatca 166  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  35223784 atcttcttcttacaatatgggttcttaatcattttgttctacaaatca 35223831  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 37086098 - 37086061
Alignment:
Q  129 tacaatatgggttcttaatccttttgttctacaaatca 166  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37086098 tacaatatgggttcttaatccttttgttatacaaatca 37086061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 37085933 - 37085850
Alignment:
Q  291 tgttgttaatgaaaggagggttatgatttaatttgatgttgaca-acattccttcccccttt-agatttgatgttgttgttaat 372  Q
    ||||||| |||||| ||||| | || |||||||| | ||||||| | ||||||||||||||| |||||||||| ||||||||||    
T  37085933 tgttgtttatgaaaagagggctgtggtttaatttaaagttgacagaaattccttcccccttttagatttgatgatgttgttaat 37085850  T

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