View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_39 (Length: 436)
Name: NF2519_low_39
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 222 - 419
Target Start/End: Complemental strand, 32556278 - 32556081
Alignment:
| Q |
222 |
gatgggcttatgcccttgaatgtaacaaaacaagaaaaatatagtagtttctaactaatataaaagaaactactcaattgagctccactagtgcaacctt |
321 |
Q |
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| T |
32556278 |
gatgggcttatgcccttgaatgtaacaaaacaagaaaaatatagtagtttctaactaatataaaagaaactactcaattgagctccactagtgcaacctt |
32556179 |
T |
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| Q |
322 |
tttatgggttgatacaacttgtgagcataatctttgtatatgatatttatattcttcattcactttatttggtatatagtattaggaccccaattatt |
419 |
Q |
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| T |
32556178 |
tttatgggttgatacaacttgtgagcataatctttgtatatgatatttatattcttcattcactttatttggtatatagtattaggaccccaattatt |
32556081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 32556484 - 32556342
Alignment:
| Q |
16 |
atagggcgcgcgagaaatcattatcatgggaatagaaggaatctataatatatgtatgaaacggtattgtcacacctaagtatagacttttaaaacattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32556484 |
atagggcgcgcgagaaatcattatcatgggaatagaaggaatctataatatatgtatgaaacggtattgtcacacctaagtatagacttttaaaacattt |
32556385 |
T |
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| Q |
116 |
ctagggatacttttatctttttcttaaacaaatcggattcatg |
158 |
Q |
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| T |
32556384 |
ctagggatacttttatctttttcttaaacaaatcggattcatg |
32556342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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