View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_4 (Length: 719)

Name: NF2519_low_4
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_4
NF2519_low_4
[»] chr7 (8 HSPs)
chr7 (16-703)||(2372691-2373378)
chr7 (313-383)||(30022852-30022922)
chr7 (402-475)||(21386905-21386978)
chr7 (313-383)||(21386807-21386877)
chr7 (313-363)||(33696919-33696969)
chr7 (438-475)||(30022751-30022788)
chr7 (313-352)||(29644632-29644671)
chr7 (402-475)||(29644500-29644573)
[»] chr6 (5 HSPs)
chr6 (402-650)||(3377284-3377535)
chr6 (313-383)||(3377563-3377633)
chr6 (313-383)||(14608502-14608572)
chr6 (313-383)||(32154882-32154952)
chr6 (402-471)||(32154980-32155049)
[»] chr4 (5 HSPs)
chr4 (402-650)||(45765033-45765284)
chr4 (313-383)||(21858074-21858144)
chr4 (313-383)||(21913937-21914007)
chr4 (313-363)||(45764935-45764985)
chr4 (438-475)||(35194575-35194612)
[»] chr5 (8 HSPs)
chr5 (549-688)||(21361854-21361993)
chr5 (402-509)||(27188238-27188345)
chr5 (313-383)||(38424564-38424634)
chr5 (402-475)||(27341527-27341600)
chr5 (313-381)||(21362173-21362241)
chr5 (402-475)||(13544919-13544992)
chr5 (313-363)||(13545040-13545090)
chr5 (402-475)||(25456028-25456101)
[»] chr3 (2 HSPs)
chr3 (540-650)||(9666151-9666261)
chr3 (313-363)||(9665912-9665962)
[»] chr2 (11 HSPs)
chr2 (313-383)||(5607256-5607326)
chr2 (313-383)||(10316224-10316294)
chr2 (313-383)||(10316549-10316619)
chr2 (313-380)||(10315860-10315927)
chr2 (313-383)||(10315496-10315566)
chr2 (313-363)||(10317270-10317320)
chr2 (313-381)||(10316906-10316974)
chr2 (313-362)||(9758757-9758806)
chr2 (402-475)||(10317367-10317440)
chr2 (416-475)||(14252223-14252282)
chr2 (438-471)||(5607159-5607192)
[»] chr1 (9 HSPs)
chr1 (402-475)||(43214832-43214905)
chr1 (313-363)||(43214953-43215003)
chr1 (402-475)||(22388698-22388771)
chr1 (313-363)||(44209569-44209619)
chr1 (313-363)||(44209746-44209796)
chr1 (402-475)||(32814582-32814655)
chr1 (313-363)||(22388819-22388869)
chr1 (313-363)||(32814703-32814753)
chr1 (438-471)||(44209452-44209485)
[»] scaffold0140 (1 HSPs)
scaffold0140 (316-475)||(4805-4968)


Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 16 - 703
Target Start/End: Complemental strand, 2373378 - 2372691
Alignment:
Q  16 atacaaaatgaccctgaatgataaaactcaaaatttggtataaaccaatgctattagtacatctctgaaatcacaatgagtttgataaaatcacggtaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2373378 atacaaaatgaccctgaatgataaaactcaaaatttggtataaaccagtgctattagtacatgtctgaaatcacaatgagtttgataaaatcacggtaac 2373279  T
Q  116 acattatgattctgacaaactcacagataatcgaaacatgtagtaaacatcacctggaagttgtaactagtagcagcacacggggcagcgaattagtcca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2373278 acattatgattctgacaaactcacagataatcgaaacatgtagtaaacatcacctggaagatgtaactagtagcagcacacggggcagcgaattagtcca 2373179  T
Q  216 ttttcattacaatccggacaacgttggaatccaaactcgccttcttcatgaccatgatcgtcatatgattcttcgtcctcgtcaccagcttcattaaaga 315  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||  ||| ||||| || |||||| ||||||   |||    
T  2373178 ttttcattacaatccggacaacgttggaatccaaacttgccttcttcacgaccatgatcatcatattcttcctcgtcgtcatcaccatcttcatagtaga 2373079  T
Q  316 ttttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccaccacaactatccgcaagcttctcacaacattccaa 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||  |||||||||||||||||    
T  2373078 ttttacaacttccaaaacaagtttcacaaggaacaaaccttatatcaccacaattctcacatccaccacaactatcctcaattttctcacaacattccaa 2372979  T
Q  416 caatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgtaattcctaccaacaaaaacccttggtaatcttcctccacca 515  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||    
T  2372978 caatttctcaagttttccatcttcatgaagtttctcaatttcctcaactccaccaatgtaattcttaccaacaaaaacccttggtaatcctcctccccca 2372879  T
Q  516 tacaaatcacctaaaagctctcttagctcctccttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaaccctctcaaaatcatcc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2372878 tacaaatcacctaaaagctctcttagctcctccttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaaccctctcaaaatcatcc 2372779  T
Q  616 tcacttggcaacaatcttcataagtctttctcacccctcttaagcttgtgaagtagaacacaaccttttcctttccaccaatcttaac 703  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2372778 ttacttggcaacaatcttcataagtctttctcacccctcttaagcttgtgaagtagaacacaaccttttcctttccaccaatcttaac 2372691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 30022922 - 30022852
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || |  |||||||||||||    
T  30022922 agattttacaacttccataacatgtttcacaaggaacaaactttatatcaccacaagcctcacatccacca 30022852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 21386905 - 21386978
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||||||||||||||||||||||    
T  21386905 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaccaatgta 21386978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 21386807 - 21386877
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||| ||||||| | ||||||| || |  |||||||||||||    
T  21386807 agattttacaacttccataacatgtttcacaagaaacaaacttgatatcaccacaagcctcacatccacca 21386877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 33696919 - 33696969
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||| ||||||||||||| |||||||||    
T  33696919 agattttacaacttccataacatgtttaacaaggaacaaactttatatcac 33696969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 30022788 - 30022751
Alignment:
Q  438 tcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  30022788 tcatgaagtttctgaatttcctcaactccaccaatgta 30022751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 29644671 - 29644632
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaa 352  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  29644671 agattttacaacttccataacatgtttcacaaggaacaaa 29644632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 29644573 - 29644500
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||||||||||| || |||||||    
T  29644573 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaacttcatcaatgta 29644500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 402 - 650
Target Start/End: Complemental strand, 3377535 - 3377284
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgtaattcctaccaacaaaaacccttggta 501  Q
    |||||||| || || ||||||||||||||   ||| ||||| | ||||| |||||||||||||||||||||||| ||||| |||| ||| ||  ||||||    
T  3377535 tcacaacaatcaaataatttctcaagctttttatcatcatgtaatttctgaatttcctcaactccaccaatgtatttccttccaataaacacttttggta 3377436  T
Q  502 atcttcctccaccata---caaatcacctaaaagctctcttagctcctccttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaa 598  Q
    |||  |||  ||||||   |   ||||| |  | |||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||| || |  |||||    
T  3377435 atccacctttaccatagttcccttcaccaagtaactctttgagctcttccttaaatcctaaatgcattgacacatctctctcatcaacccttatgcctaa 3377336  T
Q  599 ccctctcaaaatcatcctcacttggcaacaatcttcataagtctttctcacc 650  Q
     ||| |||||| |||||| |||  ||||||||| |||||||| |||||||||    
T  3377335 tcctttcaaaaccatcctaactatgcaacaatcctcataagtttttctcacc 3377284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 3377633 - 3377563
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| ||||  ||||||||||||||||| ||||||||| || |  |||||||||||||    
T  3377633 agattttacaacttccataacatttttcacaaggaacaaactttatatcaccacaagcctcacatccacca 3377563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 14608572 - 14608502
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||||||||||  ||||||||| || |  |||||||||||||    
T  14608572 agattttacaacttccataacatgtttcacaaggaacaaattttatatcaccacaagcctcacatccacca 14608502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 32154882 - 32154952
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||| ||||||| ||| ||||||||| || |  |||||||||||||    
T  32154882 agattttacaacttccataacatgtttcataaggaacgaactttatatcaccacaagcctcacatccacca 32154952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 471
Target Start/End: Original strand, 32154980 - 32155049
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaa 471  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||||||||||||||||||    
T  32154980 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaa 32155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 402 - 650
Target Start/End: Original strand, 45765033 - 45765284
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgtaattcctaccaacaaaaacccttggta 501  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| |||||||||||||||| ||||||| ||| | |||| ||| ||  ||||||    
T  45765033 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaacaatgtatttctttccaataaacacttttggta 45765132  T
Q  502 atcttcctccaccata---caaatcacctaaaagctctcttagctcctccttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaa 598  Q
    ||| || |  ||||||   | | ||||| || | |||| | || || ||||| ||||||||||||||||| |||||||| |||||||| || |  |||||    
T  45765133 atcctcatttaccatagtaccattcaccaaataactctttaagttcttccttaaatcctaaatgcattgacacatctctttcatcaacccttatgcctaa 45765232  T
Q  599 ccctctcaaaatcatcctcacttggcaacaatcttcataagtctttctcacc 650  Q
     ||| ||||||||||||| |||| | ||||||| |||||||| | |||||||    
T  45765233 tcctttcaaaatcatcctaactttgtaacaatcctcataagtttatctcacc 45765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 21858144 - 21858074
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    |||||||||||||| || |||| |||||||||||||||||  ||||||||| || |  |||||||||||||    
T  21858144 agattttacaacttacataacatgtttcacaaggaacaaattttatatcaccacaaccctcacatccacca 21858074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 21914007 - 21913937
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    |||||||||||||| || |||| |||||||||||||||||  ||||||||| || |  |||||||||||||    
T  21914007 agattttacaacttacataacatgtttcacaaggaacaaattttatatcaccacaaccctcacatccacca 21913937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 45764935 - 45764985
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||||||||||||||||  |||||||||    
T  45764935 agattttacaacttccataacatgtttcacaaggaacaaattttatatcac 45764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 35194575 - 35194612
Alignment:
Q  438 tcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  35194575 tcatgaagtttctgaatttcctcaactccaccaatgta 35194612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 549 - 688
Target Start/End: Complemental strand, 21361993 - 21361854
Alignment:
Q  549 ttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaaccctctcaaaatcatcctcacttggcaacaatcttcataagtctttctca 648  Q
    |||||||||||||| ||||| |||| |||||||||||| || |  ||||| ||| ||||||||||||| |||| ||||||||  |||||||| |||||||    
T  21361993 ttgaatcctaaatgtattgacacatatctctcatcaacccttatgcctaatcctttcaaaatcatcctaactttgcaacaattctcataagtttttctca 21361894  T
Q  649 cccctcttaagcttgtgaagtagaacacaaccttttcctt 688  Q
    ||   | || ||||||||| || ||||| || ||||||||    
T  21361893 ccatgcgtaggcttgtgaaatacaacaccactttttcctt 21361854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 509
Target Start/End: Complemental strand, 27188345 - 27188238
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgtaattcctaccaacaaaaacccttggta 501  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| |||||||||||||||||||||||| ||| |  ||| ||| ||  ||||||    
T  27188345 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaataaacacttttggta 27188246  T
Q  502 atcttcct 509  Q
    ||||||||    
T  27188245 atcttcct 27188238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 38424634 - 38424564
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||||||| || |  |||||||||||||    
T  38424634 agattttacaatttccataacatgtttcacaaggaacaaactttatatcaccacaagcctcacatccacca 38424564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 27341600 - 27341527
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||||||||||||||||||||||    
T  27341600 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgta 27341527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 21362241 - 21362173
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccac 381  Q
    ||||||||||||||||| |||| ||||||||| |||||||| ||||||||| || |  |||||||||||    
T  21362241 agattttacaacttccataacacgtttcacaacgaacaaactttatatcaccacaagcctcacatccac 21362173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 13544992 - 13544919
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| |||||||||||||| |||||||||    
T  13544992 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactctaccaatgta 13544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 13545090 - 13545040
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| | |||| ||||||||||| |||||||||    
T  13545090 agattttacaacttccataacatggttcagaaggaacaaactttatatcac 13545040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 25456028 - 25456101
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||| ||||| |||||||||||||| |||||||||    
T  25456028 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaactttctgaatttcctcaactcaaccaatgta 25456101  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 650
Target Start/End: Original strand, 9666151 - 9666261
Alignment:
Q  540 agctcctccttgaatcctaaatgcattgatacatctctctcatcaactctcactcctaaccctctcaaaatcatcctcacttggcaacaatcttcataag 639  Q
    ||||| |||||||||| || ||||||||| |||||||||||| |||| || |  ||||| ||| ||||||||||||| |||| ||||||||| |||||||    
T  9666151 agctcttccttgaatcttatatgcattgacacatctctctcaccaacccttatgcctaatcctttcaaaatcatcctaactttgcaacaatcctcataag 9666250  T
Q  640 tctttctcacc 650  Q
      |||||||||    
T  9666251 gttttctcacc 9666261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 9665912 - 9665962
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    |||||||||||||||||  ||| |||||||||||||||||| |||||||||    
T  9665912 agattttacaacttccatgacatgtttcacaaggaacaaactttatatcac 9665962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 5607326 - 5607256
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||||||  | | ||||||||||||||    
T  5607326 agattttacaacttccaaaacatgtttcacaaggaacaagctttatatcaccgcaagtctcacatccacca 5607256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 10316224 - 10316294
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || |  |||||||||||||    
T  10316224 agattttacaacttccataacatgtttcacaaggaacaaactttatatcaccacaagcctcacatccacca 10316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 10316549 - 10316619
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || |  |||||||||||||    
T  10316549 agattttacaacttccataacatgtttcacaaggaacaaactttatatcaccacaagcctcacatccacca 10316619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 10315860 - 10315927
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatcca 380  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||| |  | |||||||||||    
T  10315860 agattttacaacttccataacatgtttcacaaggaacaaactttatatcaccataagtctcacatcca 10315927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 10315496 - 10315566
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca 383  Q
    ||||||||||||||||| |||| |||||||||||||||||| | ||||||| || |  |||||||||||||    
T  10315496 agattttacaacttccataacatgtttcacaaggaacaaacttaatatcaccacaagcctcacatccacca 10315566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 10317270 - 10317320
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  10317270 agattttacaacttccataacatgtttcacaaggaacaaactttatatcac 10317320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 10316906 - 10316974
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccac 381  Q
    ||||||||||||||||| |||| ||||| |||||||||||| ||||||||| || |  |||||||||||    
T  10316906 agattttacaacttccataacatgtttcgcaaggaacaaactttatatcaccacaagcctcacatccac 10316974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 9758806 - 9758757
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatca 362  Q
    ||||||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  9758806 agattttacaacttccataacatgtttcataaggaacaaactttatatca 9758757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 10317367 - 10317440
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||| ||||||||||||||||||    
T  10317367 tcacaacaatcaagcaatttctcaagctttttgtcatcatgaagtttctgaattttctcaactccaccaatgta 10317440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 14252282 - 14252223
Alignment:
Q  416 caatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||||||||||    || ||||||||||| | ||||||||||||||||||||||||    
T  14252282 caatttctcaagcttcttgtcatcatgaagtttttgaatttcctcaactccaccaatgta 14252223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Complemental strand, 5607192 - 5607159
Alignment:
Q  438 tcatgaagtttctcaatttcctcaactccaccaa 471  Q
    ||||||||||||| ||||||||||||||||||||    
T  5607192 tcatgaagtttctgaatttcctcaactccaccaa 5607159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 43214905 - 43214832
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || |||||||||||||||||    || ||||||||||||| ||||||||||||||||||||||||    
T  43214905 tcacaacaatcaaacaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgta 43214832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 43215003 - 43214953
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  43215003 agattttacaacttccacaacatgtttcacaaggaacaaactttatatcac 43214953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 22388771 - 22388698
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || | |||||||||||||||    || ||||||||||||| ||||||||||||||||||||||||    
T  22388771 tcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgta 22388698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 44209619 - 44209569
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||||| ||||||||||| |||||||||    
T  44209619 agattttacaacttccataacatgtttcataaggaacaaactttatatcac 44209569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 44209796 - 44209746
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    ||||||||||||||||| |||| |||||| ||||||||||| |||||||||    
T  44209796 agattttacaacttccataacatgtttcataaggaacaaactttatatcac 44209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 32814655 - 32814582
Alignment:
Q  402 tcacaacattccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    |||||||| || |||||||||||||| ||    || ||||||| ||||| ||||||||||||||||||||||||    
T  32814655 tcacaacaatcaaacaatttctcaagtttcttgtcatcatgaaatttctgaatttcctcaactccaccaatgta 32814582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 22388869 - 22388819
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    |||||||||||||| || |||| |||||| ||||||||||| |||||||||    
T  22388869 agattttacaactttcataacatgtttcagaaggaacaaactttatatcac 22388819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 32814753 - 32814703
Alignment:
Q  313 agattttacaacttccaaaacaagtttcacaaggaacaaaccttatatcac 363  Q
    |||||||||||||| || |||| |||| ||||||||||||| |||||||||    
T  32814753 agattttacaacttacataacatgtttaacaaggaacaaactttatatcac 32814703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 471
Target Start/End: Complemental strand, 44209485 - 44209452
Alignment:
Q  438 tcatgaagtttctcaatttcctcaactccaccaa 471  Q
    ||||||||||||| ||||||||||||||||||||    
T  44209485 tcatgaagtttctgaatttcctcaactccaccaa 44209452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 475
Target Start/End: Original strand, 4805 - 4968
Alignment:
Q  316 ttttacaacttccaaaacaagtttcacaaggaacaaaccttatatcacaacgattctcacatccacca-caact--atc-cgcaagcttctcacaacatt 411  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||||| || |  ||||||||||||| || ||   ||   ||| | | ||||| || |    
T  4805 ttttacaacttccataacatgttttacaaggaacaaactttatatcaccacaagcctcacatccaccatcacctccttcaatcaatcctttcacagcaat 4904  T
Q  412 ccaacaatttctcaagcttgccatcttcatgaagtttctcaatttcctcaactccaccaatgta 475  Q
    | | |||||||||||||||    || ||||||||||||| ||||||||||||||||||||||||    
T  4905 caagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgta 4968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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