View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_40 (Length: 436)
Name: NF2519_low_40
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 3110158 - 3110570
Alignment:
| Q |
9 |
agcataggcataatcctctataggtgcattactcgctttacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaata |
108 |
Q |
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| T |
3110158 |
agcataggcataaacctctataggtgcattactcgctctacatcgttcgagcagcttatatcccacatcagacatgttatttttacacaacccctcaata |
3110257 |
T |
|
| Q |
109 |
taagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaatacatattccacatgtttcaaatcatcactattcttacacaagc |
208 |
Q |
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| T |
3110258 |
taagcagcgtaacaatacgaattcggagtcacaccagcttcctccatttcatcaaatacatattccacgtgtttcaaatcatcactattcttacacaagc |
3110357 |
T |
|
| Q |
209 |
c-ttgataacaatagcataagtgtgatgattaggagacaaaccaaccctcttgatttcattataaacctccaaagccattttcactttatcatgttgaac |
307 |
Q |
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| T |
3110358 |
ccttgataacaatagcataagtgtgatgattaggacacaaaccaaccctcttgatttctttataaacctccaaagccattttcactttatcatgttgaat |
3110457 |
T |
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| Q |
308 |
taaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaatgcttcatcaaacata |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3110458 |
taaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaatgctccatcaaacatg |
3110557 |
T |
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| Q |
408 |
ttaagaccaacac |
420 |
Q |
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| T |
3110558 |
ttaagaccaacac |
3110570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 420
Target Start/End: Complemental strand, 41626648 - 41626293
Alignment:
| Q |
66 |
atatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaat |
165 |
Q |
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| T |
41626648 |
atatcccaaatcagactgatgattattacacaacccctcaatataagctgcatagcaatacgaattcggagtcaccccagcttctttcatttcatcaaac |
41626549 |
T |
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| Q |
166 |
acatattccacatgtttcaaatcatcactattcttacacaa-gccttgataacaatagcataagtgtgatgattaggagacaaaccaaccctcttgattt |
264 |
Q |
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| T |
41626548 |
acaccagacgcctgtttcaaatcaccgcccttcgtacccaacgccttaatgataatggcataagtgtgatggttaggacacaaacccagactcttgattc |
41626449 |
T |
|
| Q |
265 |
cattataaacctccaaagccattttcactttatcatgttgaactaaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagt |
364 |
Q |
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| T |
41626448 |
ggtcgaaaatctcgaaagccatatttacttgatcacatttaaccaaacggttaataagaaagttacaggcaaaaatatttggaagaatcccaaacctcct |
41626349 |
T |
|
| Q |
365 |
aacttgaaaatgaaacaagaaatcaaatgcttcatcaaacatattaagaccaacac |
420 |
Q |
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|| |||||| ||||| |||||||| || ||||||||||| ||||||||||||| |
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| T |
41626348 |
aatttgaaacataaacatgaaatcaatagcatcatcaaacatgttaagaccaacac |
41626293 |
T |
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