View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_48 (Length: 414)
Name: NF2519_low_48
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 53174473 - 53174874
Alignment:
| Q |
13 |
aatcaatcaaaacaaactttcattagaaaacacacataagaaaaactgtataacataacatttgaaacattgaaggttataagaacctgtggttcaaaat |
112 |
Q |
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| T |
53174473 |
aatcaatcaaaacaaactttcattagaaaacacacataagaaaaactgtataacataacatttgaaacattgaaggttataagaacctgtggttcaaaat |
53174572 |
T |
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| Q |
113 |
cttttgtcaataaaatgtttgatgccttgatatctctatggattattctcctcttgcaacctttgtgcaagtagtgaagtccacgcgctgtcccaacaac |
212 |
Q |
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| T |
53174573 |
cttttgtcaataaaatgtttgatgccttgatatctctatggattattctcctcttgcaacctttgtgcaagtagtgaagtccacgcgctgtcccaacaac |
53174672 |
T |
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| Q |
213 |
tattttatgtcttgttttccaatctaaaggagccaacttttcatctacaatataacaagattttcatatactattaacaacccnnnnnnncatttcatgt |
312 |
Q |
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| T |
53174673 |
tattttatgtcttgttttccaatctaaaggagccaactgttcatctacaatataacaagattttcatatactattaacaaccctttttttcatttcatgt |
53174772 |
T |
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| Q |
313 |
tttgataccaaaacatcatttctatgacaaataaagaggtttatgtagttaccatgaagaatagatgaaacagaaccagtggtggatagttcaaaaacaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53174773 |
tttgataccaaaacatcatttctatgacaaataaagaggtttatgtagttaccatgaagaatagatgaaacagaaccagtggtggatagttcaaaaacaa |
53174872 |
T |
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| Q |
413 |
ag |
414 |
Q |
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| T |
53174873 |
ag |
53174874 |
T |
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