View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_54 (Length: 402)
Name: NF2519_low_54
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 28505753 - 28505375
Alignment:
| Q |
19 |
atcattgagccattatagtccatgaagaaaccccacttcccacagttcttgccatctgtttcttttttccctcttcaaaattttatatcaacaaggttaa |
118 |
Q |
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| T |
28505753 |
atcattgagccattatagtccatgaagaaaccccacttcccacagttcttgccatctgtttcttttttccctcttcaaaattttatatcaacaaggttaa |
28505654 |
T |
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| Q |
119 |
aacttaagagtggtggacattggagaatttaaagagatgattttattgctgagtttataggttgaagaaggatgaatgcaaagttgaagatatacatatg |
218 |
Q |
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| T |
28505653 |
aacttaagagtggtggacattggagaatttaaagagatgattttattgctgagtttataggttgaagaaggatgaatgcaaagttgaagatatacatatg |
28505554 |
T |
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| Q |
219 |
atgttgaatg-gatgaagaagatctcaatctgttttcaatttcaaatttagtagtccatatccgtttttatttattttatgattttgacattaaaagata |
317 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28505553 |
atgttgaatgcaaagaagaagatctcaatctgttttcaatttcaaatttagtagtccatatccgtttttatttattttatgattttgacattaaaagata |
28505454 |
T |
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| Q |
318 |
aatatgctactaagtaagcaaaaaactttttagacgagatgacacgaatctctttcaagttaactaagatattcttcga |
396 |
Q |
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| T |
28505453 |
aatatgctactaagtaagcaaaaaactttttagacgagatgacacgaatctctttcaagttaactaagattttgttcga |
28505375 |
T |
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