View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_56 (Length: 399)
Name: NF2519_low_56
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 5174954 - 5174575
Alignment:
| Q |
1 |
ttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttccactaaatctttacctgatatttgatcaaattaaatccaaatacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174954 |
ttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttccactaaatctttacctgatatttgatcaaattaaatccaaatacta |
5174855 |
T |
|
| Q |
101 |
aactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcata |
200 |
Q |
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| T |
5174854 |
aactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcata |
5174755 |
T |
|
| Q |
201 |
ttccatatctcacttcttttcgtctgtgttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattag |
300 |
Q |
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| T |
5174754 |
ttccatatctcacttcttttcgtttgtgttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattag |
5174655 |
T |
|
| Q |
301 |
agacagtgagaattattgccattgcactatcgcctgttactccgagcttgagttggagaatatatgctcaacttggctat |
380 |
Q |
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| T |
5174654 |
agacagtgagaattattgccattgcactatcgcctgttactccgagcttgagttggagaatatatgctcaacttggctat |
5174575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 52002754 - 52002376
Alignment:
| Q |
1 |
ttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttccactaaatctttacctgatatttgatcaaattaaatccaaatacta |
100 |
Q |
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|||||||||||||||||| ||| || ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52002754 |
ttgccaataatatttgtaccatcat---aaaagatagattctacggtttgtttccactaaatctttacttgatatttgatcaaattaaatccaaatactg |
52002658 |
T |
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| Q |
101 |
aactcctttttcttttctcacattaatcaatttgcttttcatatattgtcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcata |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||| |
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| T |
52002657 |
aacacctttttcttttctcacattaatcaatttgcttttcatatattgtcatcagcaattgaactttgtttttcgtccttaaccaagtattataagcata |
52002558 |
T |
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| Q |
201 |
ttccatatctcacttcttttcgtctgtgttgaagataagcaaatgcctaataaagaattttcacttatgatcttggagcaggaccttgtaattatattag |
300 |
Q |
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|| |||| || ||||||||| | || |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
52002557 |
ttgcatacgtctcttcttttcatttggtttgaagataagcaaatgcctaagaaagaattttcacatatgatgttggagcaggaccttgtaattatattag |
52002458 |
T |
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| Q |
301 |
agacagtgagaattattgccattgcactatcgcctgttactccgagcttgagttggagaatatatgctcaacttggctattc |
382 |
Q |
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| T |
52002457 |
agacagtgagaattattgccattgcactatctcctgttactccgagcttgagttggagaatatatgcacaacttggctattc |
52002376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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