View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_57 (Length: 397)
Name: NF2519_low_57
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 47 - 379
Target Start/End: Original strand, 8434652 - 8434967
Alignment:
| Q |
47 |
tacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatgggcatggagtctaataact |
146 |
Q |
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| T |
8434652 |
tacacacatgccaacaagctattaatatatgcatcattcactttcatgtgttatggttatctt-----------------gggcatggagtctaataact |
8434734 |
T |
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| Q |
147 |
ctaatgaagatgatttgaagtctcatgcaaaactgaaaaatctttttgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagag |
246 |
Q |
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| T |
8434735 |
ctaatgaagatgatttgaagtctcatgcaaaactgaaaaatctttttgatttgaatgagcttcctgagtcttttgattcatatgaaattgatagtgagag |
8434834 |
T |
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| Q |
247 |
ttttgagaaatcaattgatgctattgaaaccggtaagaattcacctgatgttgttgagattgttgaagaatcggatattgagagtgaggaagaaggtaga |
346 |
Q |
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| T |
8434835 |
ttttgagaaatcaattgatgctactgaaaccggtaagaattcacctgatgttgttgagattgttgaagaatcggatattgagagtgaggaagaaggtaga |
8434934 |
T |
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| Q |
347 |
aaacctgtcattagaaggatgaagcaaacatgg |
379 |
Q |
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| T |
8434935 |
aaacctgttattagaaggatgaagcaaacatgg |
8434967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 183 - 379
Target Start/End: Complemental strand, 3811524 - 3811328
Alignment:
| Q |
183 |
aaaatctttttgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagagttttgagaaatcaattgatgctattgaaaccggtaa |
282 |
Q |
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| T |
3811524 |
aaaatctttttgatttgaatgagcttcctgagtcttttgattcatatgaaattgatagtgagagttttgagaaatcaattgatgttgctgaaaccggtaa |
3811425 |
T |
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| Q |
283 |
gaattcacctgatgttgttgagattgttgaagaatcggatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacatgg |
379 |
Q |
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| T |
3811424 |
gaattcacttgatgttattgagattgttgaagaatcagatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacatgg |
3811328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 379
Target Start/End: Original strand, 27149472 - 27149658
Alignment:
| Q |
193 |
tgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagagttttgagaaatcaattgatgctattgaaaccggtaagaattcacct |
292 |
Q |
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||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |
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| T |
27149472 |
tgatttgaatgagcttcctgaatctttgaattcatatgaaattgatagtgagagttttgagaaatcaattgatgctactaaaatcggtaagaattcacct |
27149571 |
T |
|
| Q |
293 |
gatgttgttgagattgttgaagaatcggatattgagagtgaggaagaaggtagaaaacctgtcattagaaggatgaagcaaacatgg |
379 |
Q |
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| T |
27149572 |
gatgttattgagattgttgaagaatcggatattgagagtgcggaagaatgtagaaaacctgtcattagaaggatgaagcaaacatgg |
27149658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 3817543 - 3817382
Alignment:
| Q |
29 |
gaaaactatttggcggggtacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatgg |
128 |
Q |
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| T |
3817543 |
gaaaactatttggcggggtacacacaagccaacaa-ctattaatatatgcatcattcactttgatgtgttatggttatcttctgtactcacatatcatgg |
3817445 |
T |
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| Q |
129 |
gcatggagtctaataactctaatgaagatgatttgaagtctcatgcaaaactgaaaaatcttt |
191 |
Q |
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| T |
3817444 |
gcatggagtctaataactctaatgaagatgatttgaagtctcatacaaaactgaaaaatcttt |
3817382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 27149345 - 27149480
Alignment:
| Q |
30 |
aaaactatttggcggggtacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatggg |
129 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27149345 |
aaaactatttggcggggtacacacaggccaacaagctattaatatatgcatcattcactttcatgtgttatggttatcttctctactcacatatcatggg |
27149444 |
T |
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| Q |
130 |
catggagtctaataactctaatgaagatgatttgaa |
165 |
Q |
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| T |
27149445 |
catggagtctaataactctaatgaagatgatttgaa |
27149480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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