View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_58 (Length: 396)
Name: NF2519_low_58
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 22075400 - 22075131
Alignment:
| Q |
18 |
ctttggcaccagaaccttcaaccgattccgcaaaggcgcctaaacccgataaagatacatcctcagattcgtcgcaggtaattaatccaactgaagacaa |
117 |
Q |
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| T |
22075400 |
ctttggcaccagaaccttcaaccgattccgcaaaggcgcctaaacccgataaagatacatcctcagattcgtcgcaggtaattaatccaactgaagacaa |
22075301 |
T |
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| Q |
118 |
gtctagttccgtgaagattgtgtatggaaagtttgtgtcacttggacttgtattagcttttgtgatgatcatgatgcaaacatgatattgaaacaagtgg |
217 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22075300 |
gtctagctccgtgaagattgtgtatggaaagttcgtgtcacttggacttgtattagcttttgtgatgatcatgatgcaaacatgatattgaaacaagtgg |
22075201 |
T |
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| Q |
218 |
atatgctgatgagcttcattttcagaaacatgcaccttctgttacattttattggtttttcttgtttttg |
287 |
Q |
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| T |
22075200 |
atatgctgatgagcttcattttcagaaacatgcaccttctgttacattttattggtttttcttgtttttg |
22075131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 22059783 - 22059942
Alignment:
| Q |
18 |
ctttggcaccagaaccttcaaccgattccgcaaaggcgcctaaacccgataaagatacatcctcagattcgtcgcaggtaattaatccaactgaagacaa |
117 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||| |
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| T |
22059783 |
ctttggcaccagaaccttcaaccgatacagcaaaggcacctaaacccgataaagatacatcatcagattcgtcgcaggtgattaatccaactgtaaacaa |
22059882 |
T |
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| Q |
118 |
gtctagttccgtgaagattgtgtatggaaagtttgtgtcacttggacttgtattagcttt |
177 |
Q |
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| T |
22059883 |
gtctggctctatcaagattgtgtatggaaagtggatgtcagttggacttgtattaccttt |
22059942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 22075136 - 22075081
Alignment:
| Q |
326 |
tttttggaggtttgcgtgattatttatcttaacagtatttatatttaattttcttct |
382 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22075136 |
tttttggaggtttgcgtgattatttatctt-acagtatttatatttaattttcttct |
22075081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 22059982 - 22060094
Alignment:
| Q |
218 |
atatgctgatgagcttcatt-ttcagaaacatgcaccttctgttacattttattggtttt-tcttgtttttgaattcatagcttaggaaaaa-actttga |
314 |
Q |
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||||||| |||| |||||| ||||||| || |||| |||| ||||| ||| |||||||| |||||||||||||||| || |||||| | | ||||||| |
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| T |
22059982 |
atatgcttttgagtttcattcttcagaa-cacgcacgttcttttacaattttttggttttgtcttgtttttgaattcttatcttagggagtatactttga |
22060080 |
T |
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| Q |
315 |
gaggcgagagcttt |
328 |
Q |
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|||||||||||||| |
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| T |
22060081 |
gaggcgagagcttt |
22060094 |
T |
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