View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2519_low_6 (Length: 695)

Name: NF2519_low_6
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2519_low_6
NF2519_low_6
[»] scaffold0016 (2 HSPs)
scaffold0016 (11-421)||(52970-53391)
scaffold0016 (468-555)||(53444-53531)
[»] scaffold1526 (2 HSPs)
scaffold1526 (11-395)||(286-686)
scaffold1526 (485-539)||(750-800)
[»] chr8 (2 HSPs)
chr8 (11-395)||(44496093-44496494)
chr8 (485-518)||(44495996-44496029)
[»] chr2 (3 HSPs)
chr2 (11-307)||(3378923-3379226)
chr2 (345-395)||(3378845-3378895)
chr2 (485-518)||(3378748-3378781)
[»] scaffold0642 (3 HSPs)
scaffold0642 (11-181)||(4832-5009)
scaffold0642 (217-307)||(4731-4821)
scaffold0642 (360-395)||(4691-4726)
[»] scaffold0105 (3 HSPs)
scaffold0105 (11-181)||(24059-24236)
scaffold0105 (217-307)||(24248-24338)
scaffold0105 (360-395)||(24343-24378)
[»] scaffold0345 (3 HSPs)
scaffold0345 (11-181)||(14745-14922)
scaffold0345 (217-307)||(14643-14733)
scaffold0345 (360-395)||(14603-14638)
[»] chr4 (8 HSPs)
chr4 (256-339)||(28335593-28335677)
chr4 (256-339)||(44787548-44787632)
chr4 (360-417)||(28335822-28335879)
chr4 (360-417)||(44787777-44787834)
chr4 (91-144)||(28335400-28335452)
chr4 (91-144)||(44787355-44787407)
chr4 (220-261)||(28335530-28335571)
chr4 (220-261)||(44787485-44787526)


Alignment Details
Target: scaffold0016 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 52970 - 53391
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-----tcaaggaaaacaatccataacttgaaatgaa 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||             |||||||||||||||||||||||||||||||    
T  52970 cacagacgaaagatgacatttacatataatccattaaaatacacattggatgtttgaagaaaaaaaaaatcaaggaaaacaatccataacttgaaatgaa 53069  T
Q  106 ttgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacatnnnnnnn 205  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||           
T  53070 ttaattgacatggctcttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaag 53169  T
Q  206 nnnnnnn-----ggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaag 300  Q
                ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53170 aaaaagaaaaaaggtgtgcatgaaggtgcaaagtccaaattttgctgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaatcaaag 53269  T
Q  301 aataaaa-acatatgattaaatcaaaccgtcattagttacctggattagagcttagatatcaacaacaaagaggagccagtcaagaatagagataaatct 399  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53270 aataaaacacatatgattaaatcaaaccgtcattggttacctggattagagcttagatatcaacaacaaagaggagccagtcaagaacagagataaatct 53369  T
Q  400 acaaccaagattagataagtat 421  Q
    ||||||||||||||||||||||    
T  53370 acaaccaagattagataagtat 53391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 468 - 555
Target Start/End: Original strand, 53444 - 53531
Alignment:
Q  468 tgaacttataacccaaaattcattaaatttctaaattagtatgaccagtcagtcatagagctcatcaaaatatattaacttataaaat 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53444 tgaacttataacccaaaattcattaaatttctaaattagtatgaccagtcagtcatagagctcatcaaaatatattaacatataaaat 53531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 286 - 686
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  286 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatga 385  T
Q  105 attgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnn 202  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  386 attaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaa 485  T
Q  203 nnnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaa 302  Q
              |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  486 gaaaaaaaaaggtgcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaa 585  T
Q  303 taaaa-acatatgattaaatcaaaccgtcattagttacctgga-------ttagagcttagatatcaacaacaaagaggagccagtcaagaatagagata 394  Q
    ||||| |||||||||||||||||||| ||||| ||||||| ||       ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  586 taaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaagaatagagata 685  T
Q  395 a 395  Q
    |    
T  686 a 686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 750 - 800
Alignment:
Q  485 attcattaaatttctaaattagtatgaccagtcagtcatagagctcatcaaaata 539  Q
    ||||||||||||||||||||||||||||| ||||    ||||||| |||||||||    
T  750 attcattaaatttctaaattagtatgacccgtca----tagagctgatcaaaata 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 44496494 - 44496093
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatg 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||               |||||||||||||||||||| ||||||||    
T  44496494 cacagacgaaagatgacatttatatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaattcaaggaaaacaatccataaattgaaatg 44496395  T
Q  104 aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacatnnnnn 203  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||         
T  44496394 aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaa 44496295  T
Q  204 nnnnnnnnn--ggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaaga 301  Q
               |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44496294 agaaaaaaaaaggtgcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaaga 44496195  T
Q  302 ataaaa-acatatgattaaatcaaaccgtcattagttacctgga-------ttagagcttagatatcaacaacaaagaggagccagtcaagaatagagat 393  Q
    |||||| |||||||||||||||||||| ||||| ||||||| ||       ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44496194 ataaaacacatatgattaaatcaaaccatcattggttacctagatatcaacttagagcttagatatcaacaacaaagaggagtcagtcaagaatagagat 44496095  T
Q  394 aa 395  Q
    ||    
T  44496094 aa 44496093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 44496029 - 44495996
Alignment:
Q  485 attcattaaatttctaaattagtatgaccagtca 518  Q
    ||||||||||||||||||||||||||||| ||||    
T  44496029 attcattaaatttctaaattagtatgacccgtca 44495996  T

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Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 3379226 - 3378923
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn------tcaaggaaaacaatccataacttgaaatga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  3379226 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatga 3379127  T
Q  105 attgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaaca-tnnnnn 203  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |         
T  3379126 attaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacattaaaaa 3379027  T
Q  204 nnnnnnnnnggtctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaat 303  Q
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3379026 gaaaaaaaaggtgtgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaataat 3378927  T
Q  304 aaaa 307  Q
    ||||    
T  3378926 aaaa 3378923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 3378895 - 3378845
Alignment:
Q  345 ttagagcttagatatcaacaacaaagaggagccagtcaagaatagagataa 395  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3378895 ttagagcttagatatcaacaacaaagaggagtcagtcaagaatagagataa 3378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 3378781 - 3378748
Alignment:
Q  485 attcattaaatttctaaattagtatgaccagtca 518  Q
    ||||||||||||||||||||||||||||| ||||    
T  3378781 attcattaaatttctaaattagtatgacccgtca 3378748  T

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Target: scaffold0642 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 5009 - 4832
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||| |||||||    
T  5009 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatg 4910  T
Q  104 aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa 181  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  4909 aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa 4832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 4821 - 4731
Alignment:
Q  217 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4821 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 4731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 4726 - 4691
Alignment:
Q  360 caacaacaaagaggagccagtcaagaatagagataa 395  Q
    |||||||||||||||| |||||||||||||||||||    
T  4726 caacaacaaagaggagtcagtcaagaatagagataa 4691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 24059 - 24236
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnn-------tcaaggaaaacaatccataacttgaaatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||| |||||||    
T  24059 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatg 24158  T
Q  104 aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa 181  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  24159 aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa 24236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 24248 - 24338
Alignment:
Q  217 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24248 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 24338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 395
Target Start/End: Original strand, 24343 - 24378
Alignment:
Q  360 caacaacaaagaggagccagtcaagaatagagataa 395  Q
    |||||||||||||||| |||||||||||||||||||    
T  24343 caacaacaaagaggagtcagtcaagaatagagataa 24378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 14922 - 14745
Alignment:
Q  11 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgnnnnnnnnt-------caaggaaaacaatccataacttgaaatg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| |||||||    
T  14922 cacagacgaaagatgacatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatacaaggaaaacaatccataacatgaaatg 14823  T
Q  104 aattgattgacatggctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa 181  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14822 aattaattgacatggctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa 14745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 14733 - 14643
Alignment:
Q  217 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14733 tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa 14643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 395
Target Start/End: Complemental strand, 14638 - 14603
Alignment:
Q  360 caacaacaaagaggagccagtcaagaatagagataa 395  Q
    |||||||||||||||| |||||||||||||||||||    
T  14638 caacaacaaagaggagtcagtcaagaatagagataa 14603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 28335593 - 28335677
Alignment:
Q  256 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatgattaaatcaaaccgtcattagttac 339  Q
    |||||||||||||| |||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  28335593 tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaacacatgtgattaaatcaaaccatcattagttac 28335677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 44787548 - 44787632
Alignment:
Q  256 tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatgattaaatcaaaccgtcattagttac 339  Q
    |||||||||||||| |||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  44787548 tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaacacatgtgattaaatcaaaccatcattagttac 44787632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 28335822 - 28335879
Alignment:
Q  360 caacaacaaagaggagccagtcaagaatagagataaatctacaaccaagattagataa 417  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||    
T  28335822 caacaacaaagagaagtcagtcaagaatatagataaatctacaaccaaaattagataa 28335879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 44787777 - 44787834
Alignment:
Q  360 caacaacaaagaggagccagtcaagaatagagataaatctacaaccaagattagataa 417  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||    
T  44787777 caacaacaaagagaagtcagtcaagaatatagataaatctacaaccaaaattagataa 44787834  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 28335400 - 28335452
Alignment:
Q  91 ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca 144  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||    
T  28335400 ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca 28335452  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 44787355 - 44787407
Alignment:
Q  91 ataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca 144  Q
    ||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||    
T  44787355 ataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca 44787407  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 28335530 - 28335571
Alignment:
Q  220 atgaagttgcaaagtccaaattttgttgaagggtaatcaaat 261  Q
    |||||| ||||| ||| |||||||||||||||||||||||||    
T  28335530 atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat 28335571  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 44787485 - 44787526
Alignment:
Q  220 atgaagttgcaaagtccaaattttgttgaagggtaatcaaat 261  Q
    |||||| ||||| ||| |||||||||||||||||||||||||    
T  44787485 atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat 44787526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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