View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_60 (Length: 392)
Name: NF2519_low_60
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 11471084 - 11471311
Alignment:
| Q |
28 |
atcctttctcaatatatttgtataactctaaacgttttgatgaaacttagttttgaaccatacattacatttgccagtttgtaacaattgaatcatgcaa |
127 |
Q |
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| T |
11471084 |
atcctttctgaatatatttgtataactctaaacgttttgatgaaacttagttttgaaccatacattgcatttgctagtttgtaacaattgtatcatgcaa |
11471183 |
T |
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| Q |
128 |
cttttcattttcatgtttaactttgaaatcttaagttttcaacttgattgtcattaatcattgtcatctaaagaatcttcatcggcttcaaatact-act |
226 |
Q |
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| T |
11471184 |
cttctcattttcatgtttaactttgaaatcttaaattttcaacttgattgtcattaatcattgtcatctaaataatcttcatcggcttcaaatactaact |
11471283 |
T |
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| Q |
227 |
tatgtcattttggggggctttatttgtg |
254 |
Q |
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| T |
11471284 |
tatgtcattttggggggctttatttgtg |
11471311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 11319109 - 11319200
Alignment:
| Q |
301 |
aaatatgacttttttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctc |
392 |
Q |
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| T |
11319109 |
aaatatgacttctttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctc |
11319200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 301 - 392
Target Start/End: Original strand, 11477130 - 11477221
Alignment:
| Q |
301 |
aaatatgacttttttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctc |
392 |
Q |
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| T |
11477130 |
aaatatgacttctttaattcaaacttcgtctttgagctccactggccacctagctaatggcattaaggatgcctagaacttctttgtctctc |
11477221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 11318843 - 11318900
Alignment:
| Q |
246 |
ttatttgtgaccattttccttcgattgtttgttctctaaaaagggttcagagtctaaa |
303 |
Q |
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| T |
11318843 |
ttatttgtgaccattttcctttgattgtttgttctctaaaaagggttcagagtctaaa |
11318900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 11476864 - 11476921
Alignment:
| Q |
246 |
ttatttgtgaccattttccttcgattgtttgttctctaaaaagggttcagagtctaaa |
303 |
Q |
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| T |
11476864 |
ttatttgtgaccattttcctttgattgtttgttctctaaaaagggttcagagtctaaa |
11476921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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