View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_61 (Length: 389)
Name: NF2519_low_61
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 2169438 - 2169082
Alignment:
| Q |
20 |
aacttcaagctcatttctagcctcacattaagcacacacaaaacatacattaagcattgcttgaataattcctaatcctacg--tatcacatatttttgt |
117 |
Q |
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| T |
2169438 |
aacttcaagctcatttctagcctcacattaagcacacacaaaacacacattaagcattgcttgaataattcctaatcctacgtatatcacggatttttgt |
2169339 |
T |
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| Q |
118 |
tataatattgtttcaataatttatctcataagtctaaagtcttaccccacannnnnnngttcttactatagcatttcgccctaccctctgttgcattgta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169338 |
tataatattgtttcaataatttatctcataagtctaaagtcttaccccacatttttttgttcttactatagcatttcgccctaccctctgttgcattgta |
2169239 |
T |
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| Q |
218 |
gtacaagaatcatcaatgtgtgatcataagaaagta---atgatattgccatcaaaagataagattacattttccatgaaaacaacttcaagaggtgtga |
314 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
2169238 |
gtacaaga---atcaatgtgtgatcataagaaagtaatgatgatattgccatcaaaagataagattacattttccatgaaaacaacttcaaca--agtga |
2169144 |
T |
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| Q |
315 |
cgcaaaggattattactaaggaacaattttgaggtatgctatagtcattttccacctttgct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169143 |
cgcaaaggattattactaaggaacaattttgaggtatgctatagtcattttccacctttgct |
2169082 |
T |
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