View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_66 (Length: 376)
Name: NF2519_low_66
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 27 - 357
Target Start/End: Complemental strand, 32770638 - 32770310
Alignment:
| Q |
27 |
atctttctttcaaattttagaagaacctatcctctactatacatacatgtaaattttctatagaaaattgatgcaagaaattcaacttatctctttatgt |
126 |
Q |
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| T |
32770638 |
atctttctttcaaattttagaagaacctatcctctactatacatacatgtaaattttctatagaaaattgatgcaagaaattcaacttatctctttatgt |
32770539 |
T |
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| Q |
127 |
cacaaaaacaataatcaaacacattaaggtacaatgcaactatgcaagacatgtatatatacctccagttggtcgccaatgtgaattacaaaagccgagg |
226 |
Q |
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| T |
32770538 |
cacaaaaacaataatcaaaca--ttaaggtacaatgcaactatgcaagacatgtatatatacctccagttggtcgccaatgtgaattacaaaagccgagg |
32770441 |
T |
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| Q |
227 |
ggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagc |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32770440 |
ggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccttgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgagc |
32770341 |
T |
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| Q |
327 |
tggaacaccaagaacaagatcaggacagggg |
357 |
Q |
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| T |
32770340 |
tggaacaccaagaacaagatcaggacagggg |
32770310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 24400586 - 24400473
Alignment:
| Q |
180 |
tatatatacctccagttggtcgccaatgtgaattacaaaagccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctga |
279 |
Q |
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| T |
24400586 |
tatacatacctccatttggtcaccaatgtgaatgacaagggcattagggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgc |
24400487 |
T |
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| Q |
280 |
acatcatttgggac |
293 |
Q |
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| T |
24400486 |
acttcattagggac |
24400473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 24407355 - 24407227
Alignment:
| Q |
225 |
ggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatga |
324 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || |
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| T |
24407355 |
ggggacatacttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgt |
24407256 |
T |
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| Q |
325 |
gctggaacaccaagaacaagatcaggaca |
353 |
Q |
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| T |
24407255 |
ggtggcacacctagtaccagatcaggaca |
24407227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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