View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_67 (Length: 374)
Name: NF2519_low_67
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 32708908 - 32708561
Alignment:
| Q |
15 |
aaatataatgtgttagtgttgatatttgatcatgcgtcactactagatagatcgaattcaccaagatattaatatatatgaaattccttttttctgtgga |
114 |
Q |
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| T |
32708908 |
aaatataatgtgttagtgttgatatttgatcatgcgtcactactagatagatcgaattcaccaagatactaatat----gaaattccttttttatgtgga |
32708813 |
T |
|
| Q |
115 |
ttagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatca |
214 |
Q |
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| T |
32708812 |
ttagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatca |
32708713 |
T |
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| Q |
215 |
tttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32708712 |
tttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcacttggcg |
32708613 |
T |
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| Q |
315 |
atggtgcatacaatgtgatgcagtgcatgagagccgtttctgaacctttgct |
366 |
Q |
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| T |
32708612 |
atggtgcatacaatgtcatgcagtgcatgagagccgtttctgaacctttgct |
32708561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 32627132 - 32627031
Alignment:
| Q |
116 |
tagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcat |
215 |
Q |
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| T |
32627132 |
tagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcat |
32627033 |
T |
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| Q |
216 |
tt |
217 |
Q |
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|| |
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| T |
32627032 |
tt |
32627031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 328
Target Start/End: Complemental strand, 27736133 - 27735949
Alignment:
| Q |
144 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
243 |
Q |
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||||||||||||||||| | || |||||||||||| |||||||| |||||||||||||| |||||||||||| |||| || ||||| |||||||| |
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| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
|
| Q |
244 |
agtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaat |
328 |
Q |
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| T |
27736033 |
agttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaat |
27735949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
148 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
247 |
Q |
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||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
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| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
|
| Q |
248 |
aattggaatgctcttga |
264 |
Q |
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| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
169 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
233 |
Q |
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|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
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| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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