View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_7 (Length: 616)
Name: NF2519_low_7
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 38823894 - 38823537
Alignment:
| Q |
19 |
gttaggtgcttccaaaaggattgtacttgatcgagttaggttgattttatatgattcagttcttctgttaccggatgacttgggagatctcttagagtca |
118 |
Q |
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| T |
38823894 |
gttaggtgcttccaaaaggaatgtacttgatcaagttaggttgattttatatgattcagttcttctgttaccggatgacttgggagatctcttagagtca |
38823795 |
T |
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| Q |
119 |
atgtatttctaacactactgatagatccaaatagagtatcaaatgtttcaacctgtcaatccattgctttaaatcatgatgtgtggcatcactaacaagg |
218 |
Q |
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| T |
38823794 |
atgtatttcttgt-ctactgatagatccaaatagattatcaaatgtttcaacctgtcaatccactgctttaaatcatgatgtgtggcatcactaacaagg |
38823696 |
T |
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| Q |
219 |
aattcaaaattaagctatagctgtgttacacattatcacaatcttttagctattttaagtacaccgagaatactttagacttagcaaagcacaagtgtag |
318 |
Q |
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| T |
38823695 |
aattcaaaattaagctatagctgtgttacacattatcacaatcttttagctattttaagtacaccgagaatactttagacttagcaaagcacaagtgtag |
38823596 |
T |
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| Q |
319 |
agttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgttt |
377 |
Q |
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| T |
38823595 |
agttcaagttctgactataaaaggtttgaatcggtgtattttcttatgttgttgtgttt |
38823537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 431 - 601
Target Start/End: Complemental strand, 38823541 - 38823371
Alignment:
| Q |
431 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttgtttagtgttttagtgattttgtgtattgtata |
530 |
Q |
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| T |
38823541 |
tgtttgcactcaacatctcgagtacaagctttttgttcagtctgtcataaattacactctgtcctttgtttagtgttttagtgattttgtgtattgtata |
38823442 |
T |
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| Q |
531 |
atgtatttctgaattgtgagttgttttgccttatgtctcaatcaacttgaacttgtaggttttcttcacat |
601 |
Q |
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| T |
38823441 |
atgtatttctgaattgtgagttgttttgccttatgtctcaatcaacttgaacttgtaggttttcttcacat |
38823371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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