View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_70 (Length: 364)
Name: NF2519_low_70
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 10745590 - 10745240
Alignment:
| Q |
1 |
tatatagcagaccatcataaaataaaaagaaaattactactaccatacttcaaactttacgtcacattcagcactagctatttccacgtcagtatttcaa |
100 |
Q |
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| T |
10745590 |
tatatagcagaccatcataaaataaaaagaaaattactactaccatacttcaaactttacgtcacattcatcactagctatttccacgtcagtatttcaa |
10745491 |
T |
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| Q |
101 |
tgcatgcttgcttcctctcaatttccagtttttggtccacatagtttgttgttggcattatcttccagtttaaataatatcttcctcaagttggaagtca |
200 |
Q |
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| T |
10745490 |
tgcatgcttgcttcctctcaatttccagtttttggtccacatagtttgttgttggcattatcttccagtttaaataatatcttcctcaagttggaagtca |
10745391 |
T |
|
| Q |
201 |
agaaataatattatttaaaactaatttgcccttannnnnnngaagaagcgaaactagcccaataaaactaacttcagagagaatcgtcactaacacgtta |
300 |
Q |
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| T |
10745390 |
agaaataatattatttaaaactaatttgcccttatttttttgaagaagcgaaactagcccaataaaattaacttcagagagaatcgacactaacacttta |
10745291 |
T |
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| Q |
301 |
aagagaagtataatgtaaggtcacagtttggctcccatgtgaatgtccgtc |
351 |
Q |
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| T |
10745290 |
aagagaagtataatgtaaggtcacagtttggctcccatgtgaatgtccgtc |
10745240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 10758114 - 10757948
Alignment:
| Q |
3 |
tatagcagaccatcataaaataaaaagaaaattactactaccatacttcaaactttacgtcacattcagcactagctatttccacgtcagt-------at |
95 |
Q |
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| T |
10758114 |
tatagcagatcatcataaaataaaaagcaaattactactaacatacttcaaactttacatcgcattcatc--tggctctttccacacaatttccacatat |
10758017 |
T |
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| Q |
96 |
ttcaatgcatgcttgcttcctctcaatttccagtttttggtccacatagtttgttgttggcattatcttcc |
166 |
Q |
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| T |
10758016 |
ttcaatgcaagcttgcttcctctcaatttccag--tttggtccacatagtttggtgtcggcattatcttcc |
10757948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 10766140 - 10765999
Alignment:
| Q |
91 |
agtatttcaatgcatgcttgcttcctctcaatttccagtttttggtccacatagtttgttgttggcattatcttccagtttaaataa---tatcttcctc |
187 |
Q |
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| T |
10766140 |
agtatttcaatgcatgcatgcttcttctcaatttccag--tttggtccacatagtttggtgttggcaccgtctttcagtttaaataatattatcttcctc |
10766043 |
T |
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| Q |
188 |
aagttggaagtcaag-aaataatattatttaaaactaatttgcc |
230 |
Q |
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| T |
10766042 |
aaaatggcagtcatgaaaataatattgtttaaaactaatttgcc |
10765999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 10562385 - 10562499
Alignment:
| Q |
27 |
aagaaaattactactaccatacttcaaactttacgt----cac--attcagcactagctatttccacgtcagtatttcaatgcatgcttgc----ttcct |
116 |
Q |
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|||||||||||||||| || |||||||||||||||| || ||||| |||||||| ||||||| | ||||||||||||||||| ||| ||||| |
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| T |
10562385 |
aagaaaattactactaacaaacttcaaactttacgtgtggcattaattcatcactagctctttccacattagtatttcaatgcatgcatgcatgcttcct |
10562484 |
T |
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| Q |
117 |
ctcaatttccagttt |
131 |
Q |
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| T |
10562485 |
ctcaatttccagttt |
10562499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 10719569 - 10719493
Alignment:
| Q |
45 |
atacttcaaactttacgtcacattcagcactagctatttccacgtcagtatttcaatgcatgcttgcttcctctcaatt |
123 |
Q |
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|||||| ||| |||| |||||| |||||| |||||||| ||| |||||||| ||||||||||||| ||||||||||| |
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| T |
10719569 |
atactttaaagtttatgtcacagtcagcattagctattgccaa--cagtatttaaatgcatgcttgcctcctctcaatt |
10719493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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