View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_73 (Length: 357)
Name: NF2519_low_73
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 26325869 - 26326193
Alignment:
| Q |
18 |
atcatcctggtattcaacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26325869 |
atcatcctggtattcaacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatt |
26325968 |
T |
|
| Q |
118 |
tggaatgaataactttgaagcgggtagttcatcacgaacgaatgagaatcaacaacagaccgaagcgttggcacttaatcaatggccaccagaacaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26325969 |
tggaatgaataactttgaagcgggtagttcatcacgaacgaatgagaatcaacaacagactgaagcgttggcacttgatcaatggccaccagaacaacaa |
26326068 |
T |
|
| Q |
218 |
caaaattcttccagtggtagtcaagttcttagacgaattattcactctaatggttagtttttaatcatatatatgtccaaaattaatcactacaagaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26326069 |
caaaattcttccagtggtagtcaagttcttagacgaattattcactctaatggttagtttttaatcatatatatgtccaaaattaatcactacaagaaaa |
26326168 |
T |
|
| Q |
318 |
ccagttatttttatttttgatatat |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26326169 |
ccagttatttttatttttgatatat |
26326193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 48320120 - 48320064
Alignment:
| Q |
32 |
caacatgaacatggtactactaatgaaacattttctcttccaatggttcaaaatcaa |
88 |
Q |
| |
|
||||||| | |||||| ||| ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
48320120 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaa |
48320064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University