View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_76 (Length: 349)
Name: NF2519_low_76
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 1260240 - 1259931
Alignment:
| Q |
20 |
aaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttttggttactgtccattcaaatgtaatttaaatcgtt |
119 |
Q |
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| T |
1260240 |
aaaattaattgaataatagcctcatacactacattcattctatgtcaatctagtgttcattgttt-ggttactgtccattcaaatgtaatttaaatcgtt |
1260142 |
T |
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| Q |
120 |
taagatattttttcgatctccaaaggaattattggaagacttttggattatatcgctctttttaaggtgtttaatgacattgtttagaaattatgcatgc |
219 |
Q |
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| T |
1260141 |
taagatattttttcgatctccaaagaaattattggaagacttttggattatatcgctctttttaaggtatttaatgacattgtttagaaattatgcatgc |
1260042 |
T |
|
| Q |
220 |
aaattatcaatcacaacatcctttataataaaacaactaagctacaaatgtactggagttttactgcactgtaaaatccgtctagaaatacacccttaag |
319 |
Q |
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| T |
1260041 |
aaattatcaatcacaacatcc-ttataataaaacaactaagctagaagtgtactggagttttactgcactctaaaatccgtctaaaaatacacctttaag |
1259943 |
T |
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| Q |
320 |
atatggcgcaat |
331 |
Q |
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| T |
1259942 |
atatggcacaat |
1259931 |
T |
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