View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2519_low_77 (Length: 344)
Name: NF2519_low_77
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_77 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 38634671 - 38634986
Alignment:
| Q |
11 |
cagagagacataaggagtaggaactgtcaaataccattcaagatttctcaagattgttttctccataaccagaacctgttctctaacatatgcattgtct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634671 |
cagaaagacataaggagtaggaactgtcaaataccattcaagatttctcaagattgttttctccataaccagaacctgttctctaacatatgcattgtct |
38634770 |
T |
|
| Q |
111 |
gatatgcatacaaaatcattgacctgtatacacaaatgaaacaaagacattcaataaaccatatagcatatagacacatttgataaaccatatacaagat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634771 |
gatatgcatacaaaatcattgacctgtatacacaaatgaaacaaagacattcaataaaccatatagcatatagacacatttgataaaccatatacaagat |
38634870 |
T |
|
| Q |
211 |
aaaaggagttctacctctggtgcccaaatctcttcatactttgatgcaataagcattgagcttatgccaacaagctgaagttcctttctaggtacagcct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38634871 |
aaaaggagttctacctctggtgcccaaatctcttcatactttgatgcaataagcattgagcttatgccaacaagctgaagttcctttctaggtacagcct |
38634970 |
T |
|
| Q |
311 |
ttgtggacaagaatcg |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38634971 |
ttgtggacaagaatcg |
38634986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University