View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2519_low_78 (Length: 339)
Name: NF2519_low_78
Description: NF2519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2519_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 323
Target Start/End: Original strand, 23875450 - 23875763
Alignment:
| Q |
10 |
agaagaaacttacagtatagatgcttgattccaatcaatgttttgagaagaaagtcctaaacccatcatatgcaagttggagtcattgtttgaagttgaa |
109 |
Q |
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| T |
23875450 |
agaagaaacttacagtatagatgcttgattccaatcaatgttttgagaagaaagtcctaaacccatcatatgcaagttggagtcattgtttgaagttgaa |
23875549 |
T |
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| Q |
110 |
gaatctgaaggttgaagcttttgagtagtatcatgaaaaaccacggaggaactaccggaagcagacatagtatcatgatgttgttgttgctgctgccaac |
209 |
Q |
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| T |
23875550 |
gaatctgaaggttgaagcttttgagtagtatcatgaaaaaccacggaggaactaccggaagcagacatagtatcatgatgttgttgttgctgctgccaac |
23875649 |
T |
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| Q |
210 |
ctccaaaggaagaagannnnnnnnnnnnnnnnnctacactttcaaacctcatgtttctagctggtgtctcccaccaatttccacttgcttgaaattgttc |
309 |
Q |
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| T |
23875650 |
ctccaaaggaagaagattgttgttgttgttgttctacactttcaaacctcatgtttctagctggtgtctcccaccaatttccacttgcttgaaattgttc |
23875749 |
T |
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| Q |
310 |
ttctgccataattg |
323 |
Q |
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| T |
23875750 |
ttctgccataattg |
23875763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 34351206 - 34351265
Alignment:
| Q |
28 |
agatgcttgattccaatcaatgttttgagaagaaagtcctaaacccatcatatgcaagtt |
87 |
Q |
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| T |
34351206 |
agatggttgattccaatccaaggtatgagaagaaagacctaaacccatcatatgcaagtt |
34351265 |
T |
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